5cyt: Difference between revisions

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[[Image:5cyt.jpg|left|200px]]<br /><applet load="5cyt" size="350" color="white" frame="true" align="right" spinBox="true"
caption="5cyt, resolution 1.5&Aring;" />
'''REFINEMENT OF MYOGLOBIN AND CYTOCHROME C'''<br />


==About this Structure==
==REFINEMENT OF MYOGLOBIN AND CYTOCHROME C==
5CYT is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thunnus_alalunga Thunnus alalunga] with <scene name='pdbligand=ACE:'>ACE</scene> and <scene name='pdbligand=HEM:'>HEM</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. This structure supersedes the now removed PDB entries 4CYT and 2CYT. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CYT OCA].  
<StructureSection load='5cyt' size='340' side='right'caption='[[5cyt]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
[[Category: Single protein]]
== Structural highlights ==
<table><tr><td colspan='2'>[[5cyt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thunnus_alalunga Thunnus alalunga]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CYT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CYT FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5cyt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cyt OCA], [https://pdbe.org/5cyt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5cyt RCSB], [https://www.ebi.ac.uk/pdbsum/5cyt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5cyt ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/CYC_THUAA CYC_THUAA] Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cy/5cyt_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=5cyt ConSurf].
<div style="clear:both"></div>
 
==See Also==
*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Thunnus alalunga]]
[[Category: Thunnus alalunga]]
[[Category: Takano, T.]]
[[Category: Takano T]]
[[Category: ACE]]
[[Category: HEM]]
[[Category: electron transport (heme protein)]]
 
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Retrieved from "https://proteopedia.org/5cyt"