4ppz: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
No edit summary
OCA (talk | contribs)
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{STRUCTURE_4ppz|  PDB=4ppz  |  SCENE=  }}
===Crystal structure of zinc-bound succinyl-diaminopimelate desuccinylase from Neisseria meningitidis MC58===


==Function==
==Crystal structure of zinc-bound succinyl-diaminopimelate desuccinylase from Neisseria meningitidis MC58==
[[http://www.uniprot.org/uniprot/DAPE_NEIMB DAPE_NEIMB]] Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls (By similarity).[HAMAP-Rule:MF_01690]
<StructureSection load='4ppz' size='340' side='right'caption='[[4ppz]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
 
== Structural highlights ==
==About this Structure==
<table><tr><td colspan='2'>[[4ppz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Neisseria_meningitidis_MC58 Neisseria meningitidis MC58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PPZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4PPZ FirstGlance]. <br>
[[4ppz]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PPZ OCA].  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
[[Category: Succinyl-diaminopimelate desuccinylase]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
[[Category: Anderson, W F.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ppz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ppz OCA], [https://pdbe.org/4ppz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ppz RCSB], [https://www.ebi.ac.uk/pdbsum/4ppz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ppz ProSAT]</span></td></tr>
[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
</table>
[[Category: Holz, R.]]
== Function ==
[[Category: Joachimiak, A.]]
[https://www.uniprot.org/uniprot/DAPE_NEIMB DAPE_NEIMB] Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls (By similarity).[HAMAP-Rule:MF_01690]
[[Category: Nocek, B.]]
__TOC__
[[Category: Aminopeptidase]]
</StructureSection>
[[Category: Center for structural genomics of infectious disease]]
[[Category: Large Structures]]
[[Category: Csgid]]
[[Category: Neisseria meningitidis MC58]]
[[Category: Dape]]
[[Category: Anderson WF]]
[[Category: Hydrolase]]
[[Category: Holz R]]
[[Category: M20]]
[[Category: Joachimiak A]]
[[Category: Structural genomic]]
[[Category: Nocek B]]
[[Category: Succinyl-diaminopimelate desuccinylase]]

Latest revision as of 12:42, 1 March 2024

Crystal structure of zinc-bound succinyl-diaminopimelate desuccinylase from Neisseria meningitidis MC58

4ppz, resolution 2.00Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA