4cuo: Difference between revisions
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The | ==Banyan peroxidase with glycosylation== | ||
<StructureSection load='4cuo' size='340' side='right'caption='[[4cuo]], [[Resolution|resolution]] 1.67Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[4cuo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ficus_benghalensis Ficus benghalensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4CUO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4CUO FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.67Å</td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CO3:CARBONATE+ION'>CO3</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SNN:L-3-AMINOSUCCINIMIDE'>SNN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=XYS:XYLOPYRANOSE'>XYS</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4cuo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4cuo OCA], [https://pdbe.org/4cuo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4cuo RCSB], [https://www.ebi.ac.uk/pdbsum/4cuo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4cuo ProSAT]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/A0A087WNH2_FICBE A0A087WNH2_FICBE] | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
A crystal structure of banyan peroxidase (BP) purified from the latex of Ficus benghalensis, has been solved at 1.67 A resolution by SAD phasing. The refined structure includes 306 amino acid residues, a heme, and two calcium ions. The protein belongs to class III peroxidases and is the first one from plant latex. Extensive glycosylation was observed with N-linked glycans attached to seven asparagine residues. The enzyme is stable against a wide range of pH, temperature, chemical denaturants and organic solvents probably due to its high glycosylation. An unexpected post-translational modification of Asp290 was identified as succinimide moiety. Kinetic parameters of BP have been determined using various hydrogen donor substrates and hydrogen peroxide. This article is protected by copyright. All rights reserved. | |||
Posttranslational modification and extended glycosylation pattern of a plant latex peroxidase of native source characterized by X-ray crystallography.,Palm GJ, Sharma A, Kumari M, Panjikar S, Albrecht D, Jagannadham MV, Hinrichs W FEBS J. 2014 Jun 30. doi: 10.1111/febs.12900. PMID:24980207<ref>PMID:24980207</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
</div> | |||
<div class="pdbe-citations 4cuo" style="background-color:#fffaf0;"></div> | |||
== References == | |||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Ficus benghalensis]] | |||
[[Category: Large Structures]] | |||
[[Category: Hinrichs W]] | |||
[[Category: Palm GJ]] | |||
[[Category: Sharma A]] | |||
