3c5m: Difference between revisions

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New page: left|200px<br /><applet load="3c5m" size="350" color="white" frame="true" align="right" spinBox="true" caption="3c5m, resolution 2.60Å" /> '''Crystal structure of...
 
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[[Image:3c5m.jpg|left|200px]]<br /><applet load="3c5m" size="350" color="white" frame="true" align="right" spinBox="true"
caption="3c5m, resolution 2.60&Aring;" />
'''Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199'''<br />


==About this Structure==
==Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199==
3C5M is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_rimd_2210633 Vibrio parahaemolyticus rimd 2210633] with <scene name='pdbligand=MN:'>MN</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Known structural/functional Sites: <scene name='pdbsite=AC1:Mn+Binding+Site+For+Residue+A+401'>AC1</scene>, <scene name='pdbsite=AC2:Mn+Binding+Site+For+Residue+B+401'>AC2</scene> and <scene name='pdbsite=AC3:Mn+Binding+Site+For+Residue+C+401'>AC3</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C5M OCA].  
<StructureSection load='3c5m' size='340' side='right'caption='[[3c5m]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
[[Category: Single protein]]
== Structural highlights ==
[[Category: Vibrio parahaemolyticus rimd 2210633]]
<table><tr><td colspan='2'>[[3c5m]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_RIMD_2210633 Vibrio parahaemolyticus RIMD 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C5M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C5M FirstGlance]. <br>
[[Category: Abashidze, M.]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
[[Category: Acton, T B.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
[[Category: Baran, M C.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c5m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c5m OCA], [https://pdbe.org/3c5m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c5m RCSB], [https://www.ebi.ac.uk/pdbsum/3c5m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c5m ProSAT], [https://www.topsan.org/Proteins/NESGC/3c5m TOPSAN]</span></td></tr>
[[Category: Forouhar, F.]]
</table>
[[Category: Hunt, J F.]]
== Function ==
[[Category: Janjua, H.]]
[https://www.uniprot.org/uniprot/Q87K10_VIBPA Q87K10_VIBPA]  
[[Category: Mao, L.]]
== Evolutionary Conservation ==
[[Category: Montelione, G T.]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: NESG, Northeast Structural Genomics Consortium.]]
Check<jmol>
[[Category: Owens, L A.]]
  <jmolCheckbox>
[[Category: Seetharaman, J.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c5/3c5m_consurf.spt"</scriptWhenChecked>
[[Category: Tong, L.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Wang, D.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Xiao, R.]]
  </jmolCheckbox>
[[Category: MN]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c5m ConSurf].
[[Category: 7 blade-shaped beta-propeller]]
<div style="clear:both"></div>
[[Category: lyase]]
__TOC__
[[Category: nesg]]
</StructureSection>
[[Category: northeast structural genomics consortium]]
[[Category: Large Structures]]
[[Category: protein structure initiative]]
[[Category: Vibrio parahaemolyticus RIMD 2210633]]
[[Category: psi-2]]
[[Category: Abashidze M]]
[[Category: structural genomics]]
[[Category: Acton TB]]
 
[[Category: Baran MC]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 27 08:00:06 2008''
[[Category: Forouhar F]]
[[Category: Hunt JF]]
[[Category: Janjua H]]
[[Category: Mao L]]
[[Category: Montelione GT]]
[[Category: Owens LA]]
[[Category: Seetharaman J]]
[[Category: Tong L]]
[[Category: Wang D]]
[[Category: Xiao R]]
Retrieved from "https://proteopedia.org/3c5m"