3c85: Difference between revisions

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New page: left|200px<br /><applet load="3c85" size="350" color="white" frame="true" align="right" spinBox="true" caption="3c85, resolution 1.90Å" /> '''Crystal structure of...
 
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[[Image:3c85.jpg|left|200px]]<br /><applet load="3c85" size="350" color="white" frame="true" align="right" spinBox="true"
caption="3c85, resolution 1.90&Aring;" />
'''Crystal structure of TrkA domain of putative glutathione-regulated potassium-efflux KefB from Vibrio parahaemolyticus'''<br />


==About this Structure==
==Crystal structure of TrkA domain of putative glutathione-regulated potassium-efflux KefB from Vibrio parahaemolyticus==
3C85 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_rimd_2210633 Vibrio parahaemolyticus rimd 2210633] with <scene name='pdbligand=SO4:'>SO4</scene> and <scene name='pdbligand=AMP:'>AMP</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:So4+Binding+Site+For+Residue+B+180'>AC1</scene>, <scene name='pdbsite=AC2:So4+Binding+Site+For+Residue+A+180'>AC2</scene> and <scene name='pdbsite=AC3:Amp+Binding+Site+For+Residue+C+180'>AC3</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C85 OCA].
<StructureSection load='3c85' size='340' side='right'caption='[[3c85]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
[[Category: Single protein]]
== Structural highlights ==
[[Category: Vibrio parahaemolyticus rimd 2210633]]
<table><tr><td colspan='2'>[[3c85]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_RIMD_2210633 Vibrio parahaemolyticus RIMD 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C85 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C85 FirstGlance]. <br>
[[Category: Abdullah, J.]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
[[Category: Joachimiak, A.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
[[Category: MCSG, Midwest Center for Structural Genomics.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c85 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c85 OCA], [https://pdbe.org/3c85 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c85 RCSB], [https://www.ebi.ac.uk/pdbsum/3c85 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c85 ProSAT], [https://www.topsan.org/Proteins/MCSG/3c85 TOPSAN]</span></td></tr>
[[Category: Wu, R.]]
</table>
[[Category: AMP]]
== Evolutionary Conservation ==
[[Category: SO4]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: mcsg]]
Check<jmol>
[[Category: midwest center for structural genomic]]
  <jmolCheckbox>
[[Category: protein structure initiative]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c8/3c85_consurf.spt"</scriptWhenChecked>
[[Category: psi-2]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: putative glutathione-regulated potassium-efflux kefb]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: structural genomic]]
  </jmolCheckbox>
[[Category: transmembrane]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c85 ConSurf].
[[Category: transport]]
<div style="clear:both"></div>
[[Category: transport protein]]
__TOC__
[[Category: trka domain]]
</StructureSection>
[[Category: vibrio parahaemolyticus]]
[[Category: Large Structures]]
 
[[Category: Vibrio parahaemolyticus RIMD 2210633]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar  5 13:24:40 2008''
[[Category: Abdullah J]]
[[Category: Joachimiak A]]
[[Category: Wu R]]

Latest revision as of 01:39, 21 November 2024

Crystal structure of TrkA domain of putative glutathione-regulated potassium-efflux KefB from Vibrio parahaemolyticus

3c85, resolution 1.90Å

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