3bx2: Difference between revisions

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New page: left|200px<br /><applet load="3bx2" size="350" color="white" frame="true" align="right" spinBox="true" caption="3bx2, resolution 2.84Å" /> '''Puf4 RNA binding dom...
 
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[[Image:3bx2.jpg|left|200px]]<br /><applet load="3bx2" size="350" color="white" frame="true" align="right" spinBox="true"
caption="3bx2, resolution 2.84&Aring;" />
'''Puf4 RNA binding domain bound to HO endonuclease RNA 3' UTR recognition sequence'''<br />


==About this Structure==
==Puf4 RNA binding domain bound to HO endonuclease RNA 3' UTR recognition sequence==
3BX2 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae] with <scene name='pdbligand=SO4:'>SO4</scene> and <scene name='pdbligand=NA:'>NA</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:So4+Binding+Site+For+Residue+A+951'>AC1</scene>, <scene name='pdbsite=AC2:So4+Binding+Site+For+Residue+B+952'>AC2</scene>, <scene name='pdbsite=AC3:So4+Binding+Site+For+Residue+B+954'>AC3</scene>, <scene name='pdbsite=AC4:So4+Binding+Site+For+Residue+B+955'>AC4</scene>, <scene name='pdbsite=AC5:So4+Binding+Site+For+Residue+A+956'>AC5</scene>, <scene name='pdbsite=AC6:So4+Binding+Site+For+Residue+A+957'>AC6</scene> and <scene name='pdbsite=AC7:So4+Binding+Site+For+Residue+A+958'>AC7</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BX2 OCA].  
<StructureSection load='3bx2' size='340' side='right'caption='[[3bx2]], [[Resolution|resolution]] 2.84&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[3bx2]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BX2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BX2 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.84&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bx2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bx2 OCA], [https://pdbe.org/3bx2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bx2 RCSB], [https://www.ebi.ac.uk/pdbsum/3bx2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bx2 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/PUF4_YEAST PUF4_YEAST] Is not essential for haploid growth, but may affect diploid formation.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bx/3bx2_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bx2 ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Single protein]]
[[Category: Hall TMT]]
[[Category: Hall, T M.T.]]
[[Category: Higgin JJ]]
[[Category: Higgin, J J.]]
[[Category: Miller MT]]
[[Category: Miller, M T.]]
[[Category: NA]]
[[Category: SO4]]
[[Category: ho endonuclease]]
[[Category: puf4]]
[[Category: pumilio]]
[[Category: rna binding]]
[[Category: rna binding protein/rna complex]]
[[Category: transcription]]
 
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Retrieved from "https://proteopedia.org/3bx2"