3cdx: Difference between revisions

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New page: left|200px<br /><applet load="3cdx" size="350" color="white" frame="true" align="right" spinBox="true" caption="3cdx, resolution 2.100Å" /> '''Crystal structure o...
 
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[[Image:3cdx.jpg|left|200px]]<br /><applet load="3cdx" size="350" color="white" frame="true" align="right" spinBox="true"
caption="3cdx, resolution 2.100&Aring;" />
'''Crystal structure of succinylglutamatedesuccinylase/aspartoacylase from Rhodobacter sphaeroides'''<br />


==About this Structure==
==Crystal structure of succinylglutamatedesuccinylase/aspartoacylase from Rhodobacter sphaeroides==
3CDX is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides_2.4.1 Rhodobacter sphaeroides 2.4.1] with <scene name='pdbligand=CA:'>CA</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Known structural/functional Sites: <scene name='pdbsite=AC1:Ca+Binding+Site+For+Residue+F+401'>AC1</scene>, <scene name='pdbsite=AC2:Ca+Binding+Site+For+Residue+A+401'>AC2</scene>, <scene name='pdbsite=AC3:Ca+Binding+Site+For+Residue+C+401'>AC3</scene>, <scene name='pdbsite=AC4:Ca+Binding+Site+For+Residue+B+401'>AC4</scene>, <scene name='pdbsite=AC5:Ca+Binding+Site+For+Residue+E+401'>AC5</scene> and <scene name='pdbsite=AC6:Ca+Binding+Site+For+Residue+D+401'>AC6</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDX OCA].
<StructureSection load='3cdx' size='340' side='right'caption='[[3cdx]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
[[Category: Rhodobacter sphaeroides 2 4.1]]
== Structural highlights ==
[[Category: Single protein]]
<table><tr><td colspan='2'>[[3cdx]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Cereibacter_sphaeroides_2.4.1 Cereibacter sphaeroides 2.4.1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CDX FirstGlance]. <br>
[[Category: Almo, S C.]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
[[Category: Bain, K T.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
[[Category: Bonanno, J B.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cdx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cdx OCA], [https://pdbe.org/3cdx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cdx RCSB], [https://www.ebi.ac.uk/pdbsum/3cdx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cdx ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3cdx TOPSAN]</span></td></tr>
[[Category: Burley, S K.]]
</table>
[[Category: Iizuka, M.]]
== Function ==
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
[https://www.uniprot.org/uniprot/Q3HKK3_CERS4 Q3HKK3_CERS4]  
[[Category: Patterson, K.]]
== Evolutionary Conservation ==
[[Category: Rutter, M.]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: Sauder, J M.]]
Check<jmol>
[[Category: Smith, D.]]
  <jmolCheckbox>
[[Category: Wasserman, S.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cd/3cdx_consurf.spt"</scriptWhenChecked>
[[Category: CA]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: hydrolase]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: new york structural genomix research consortium]]
  </jmolCheckbox>
[[Category: nysgxrc]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cdx ConSurf].
[[Category: plasmid]]
<div style="clear:both"></div>
[[Category: protein structure initiative]]
[[Category: psi-2]]
[[Category: structural genomic]]


''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri Mar 14 09:41:16 2008''
==See Also==
*[[Aspartoacylase 3D structures|Aspartoacylase 3D structures]]
__TOC__
</StructureSection>
[[Category: Cereibacter sphaeroides 2 4.1]]
[[Category: Large Structures]]
[[Category: Almo SC]]
[[Category: Bain KT]]
[[Category: Bonanno JB]]
[[Category: Burley SK]]
[[Category: Iizuka M]]
[[Category: Patterson K]]
[[Category: Rutter M]]
[[Category: Sauder JM]]
[[Category: Smith D]]
[[Category: Wasserman S]]
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