3wr8: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,330,058 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,330,058 edits
No edit summary
 
(5 intermediate revisions by the same user not shown)
Line 1: Line 1:
==Crystal structure of DesB from Sphingobium sp. strain SYK-6==
==Crystal structure of DesB from Sphingobium sp. strain SYK-6==
<StructureSection load='3wr8' size='340' side='right' caption='[[3wr8]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
<StructureSection load='3wr8' size='340' side='right'caption='[[3wr8]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3wr8]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WR8 OCA]. <br>
<table><tr><td colspan='2'>[[3wr8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Sphingomonas_paucimobilis Sphingomonas paucimobilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WR8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WR8 FirstGlance]. <br>
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene><br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3wku|3wku]], [[3wpm|3wpm]], [[3wr3|3wr3]], [[3wr4|3wr4]], [[3wr9|3wr9]], [[3wra|3wra]], [[3wrb|3wrb]], [[3wrc|3wrc]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>
<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wr8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wr8 OCA], [https://pdbe.org/3wr8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wr8 RCSB], [https://www.ebi.ac.uk/pdbsum/3wr8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wr8 ProSAT]</span></td></tr>
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3wr8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wr8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3wr8 RCSB], [http://www.ebi.ac.uk/pdbsum/3wr8 PDBsum]</span></td></tr>
</table>
<table>
== Function ==
[https://www.uniprot.org/uniprot/G2IKE5_SPHSK G2IKE5_SPHSK]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 14: Line 16:
Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6.,Sugimoto K, Senda M, Kasai D, Fukuda M, Masai E, Senda T PLoS One. 2014 Mar 21;9(3):e92249. doi: 10.1371/journal.pone.0092249. eCollection, 2014. PMID:24657997<ref>PMID:24657997</ref>
Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6.,Sugimoto K, Senda M, Kasai D, Fukuda M, Masai E, Senda T PLoS One. 2014 Mar 21;9(3):e92249. doi: 10.1371/journal.pone.0092249. eCollection, 2014. PMID:24657997<ref>PMID:24657997</ref>


From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>== References ==
</div>
<div class="pdbe-citations 3wr8" style="background-color:#fffaf0;"></div>
 
==See Also==
*[[Dioxygenase 3D structures|Dioxygenase 3D structures]]
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Linoleate 9S-lipoxygenase]]
[[Category: Large Structures]]
[[Category: Fukuda, M.]]
[[Category: Sphingomonas paucimobilis]]
[[Category: Kasai, D.]]
[[Category: Fukuda M]]
[[Category: Masai, E.]]
[[Category: Kasai D]]
[[Category: Senda, M.]]
[[Category: Masai E]]
[[Category: Senda, T.]]
[[Category: Senda M]]
[[Category: Sugimoto, K.]]
[[Category: Senda T]]
[[Category: Domain-swap dimer]]
[[Category: Sugimoto K]]
[[Category: Extradiol dioxygenase]]
[[Category: Fe2+ binding]]
[[Category: Oxidoreductase]]
Retrieved from "https://proteopedia.org/3wr8"