4p1w: Difference between revisions
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==Crystal structure of Atg13(17BR)-Atg17-Atg29-Atg31 complex== | ==Crystal structure of Atg13(17BR)-Atg17-Atg29-Atg31 complex== | ||
<StructureSection load='4p1w' size='340' side='right' caption='[[4p1w]], [[Resolution|resolution]] 3.20Å' scene=''> | <StructureSection load='4p1w' size='340' side='right'caption='[[4p1w]], [[Resolution|resolution]] 3.20Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[4p1w]] is a 7 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4P1W OCA]. < | <table><tr><td colspan='2'>[[4p1w]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/Lachancea_thermotolerans_CBS_6340 Lachancea thermotolerans CBS 6340]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4P1W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4P1W FirstGlance]. <br> | ||
</ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.2Å</td></tr> | ||
<tr><td class="sblockLbl"><b>[[ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4p1w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4p1w OCA], [https://pdbe.org/4p1w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4p1w RCSB], [https://www.ebi.ac.uk/pdbsum/4p1w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4p1w ProSAT]</span></td></tr> | ||
<tr | </table> | ||
== Function == | |||
<table> | [https://www.uniprot.org/uniprot/C5DF24_LACTC C5DF24_LACTC] | ||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
Assembly of the preautophagosomal structure (PAS) is essential for autophagy initiation in yeast. Starvation-induced dephosphorylation of Atg13 is required for the formation of the Atg1-Atg13-Atg17-Atg29-Atg31 complex (Atg1 complex), a prerequisite for PAS assembly. However, molecular details underlying these events have not been established. Here we studied the interactions of yeast Atg13 with Atg1 and Atg17 by X-ray crystallography. Atg13 binds tandem microtubule interacting and transport domains in Atg1, using an elongated helix-loop-helix region. Atg13 also binds Atg17, using a short region, thereby bridging Atg1 and Atg17 and leading to Atg1-complex formation. Dephosphorylation of specific serines in Atg13 enhanced its interaction with not only Atg1 but also Atg17. These observations update the autophagy-initiation model as follows: upon starvation, dephosphorylated Atg13 binds both Atg1 and Atg17, and this promotes PAS assembly and autophagy progression. | |||
Structural basis of starvation-induced assembly of the autophagy initiation complex.,Fujioka Y, Suzuki SW, Yamamoto H, Kondo-Kakuta C, Kimura Y, Hirano H, Akada R, Inagaki F, Ohsumi Y, Noda NN Nat Struct Mol Biol. 2014 May 4. doi: 10.1038/nsmb.2822. PMID:24793651<ref>PMID:24793651</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
</div> | |||
<div class="pdbe-citations 4p1w" style="background-color:#fffaf0;"></div> | |||
==See Also== | |||
*[[Autophagy-related protein 3D structures|Autophagy-related protein 3D structures]] | |||
== References == | |||
<references/> | |||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Lachancea thermotolerans CBS 6340]] | ||
[[Category: | [[Category: Large Structures]] | ||
[[Category: | [[Category: Fujioka Y]] | ||
[[Category: Noda NN]] | |||
