4ngv: Difference between revisions

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==Previously de-ionized HEW lysozyme batch crystallized in 0.5 M YbCl3==
==Previously de-ionized HEW lysozyme batch crystallized in 0.5 M YbCl3==
<StructureSection load='4ngv' size='340' side='right' caption='[[4ngv]], [[Resolution|resolution]] 1.64&Aring;' scene=''>
<StructureSection load='4ngv' size='340' side='right'caption='[[4ngv]], [[Resolution|resolution]] 1.64&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4ngv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NGV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4NGV FirstGlance]. <br>
<table><tr><td colspan='2'>[[4ngv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NGV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4NGV FirstGlance]. <br>
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=YB:YTTERBIUM+(III)+ION'>YB</scene><br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.64&#8491;</td></tr>
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4neb|4neb]], [[4nfv|4nfv]], [[4ng1|4ng1]], [[4ng8|4ng8]], [[4ngi|4ngi]], [[4ngj|4ngj]], [[4ngk|4ngk]], [[4ngl|4ngl]], [[4ngo|4ngo]], [[4ngy|4ngy]], [[4ngz|4ngz]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=YB:YTTERBIUM+(III)+ION'>YB</scene></td></tr>
<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ngv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ngv OCA], [https://pdbe.org/4ngv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ngv RCSB], [https://www.ebi.ac.uk/pdbsum/4ngv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ngv ProSAT]</span></td></tr>
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ngv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ngv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ngv RCSB], [http://www.ebi.ac.uk/pdbsum/4ngv PDBsum]</span></td></tr>
</table>
<table>
== Function ==
[https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>  
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
The influence of salt nature and concentration on tetragonal lysozyme chloride crystal solubility is presented for a set of mono-, di- and trivalent cations (Cs(+), Rb(+), Mn(2+), Co(2+) and Yb(3+)). The results show that cations have as strong an effect on protein solubility as anions and that they present their own particular effects as co-ions. Indeed, after decreasing at low ionic strength, lysozyme solubility increases with high concentration of polyvalent cations, probably due to co-ion binding and therefore the concomitant increase of the net charge of the protein-salt complex. These new results are discussed in order to progress in the understanding of the crystallisation process at the atomic level.
The adsorption of Rb(+), Cs(+), Mn(2+), Co(2+) and Yb(3+) onto the positively charged hen egg-white lysozyme (HEWL) has been investigated by solving 13 X-ray structures of HEWL crystallized with their chlorides and by applying electrospray ionization mass spectrometry (ESI-MS) first to dissolved protein crystals and then to the protein in buffered salt solutions. The number of bound cations follows the order Cs(+) &lt; Mn(2+) approximately Co(2+) &lt; Yb(3+) at 293 K. HEWL binds less Rb(+) (qtot = 0.7) than Cs(+) (qtot = 3.9) at 100 K. Crystal flash-cooling drastically increases the binding of Cs(+), but poorly affects that of Yb(3+), suggesting different interactions. The addition of glycerol increases the number of bound Yb(3+) cations, but only slightly increases that of Rb(+). HEWL titrations with the same chlorides, followed by ESI-MS analysis, show that only about 10% of HEWL binds Cs(+) and about 40% binds 1-2 Yb(3+) cations, while the highest binding reaches 60-70% for protein binding 1-3 Mn(2+) or Co(2+) cations. The binding sites identified by X-ray crystallography show that the monovalent Rb(+) and Cs(+) preferentially bind to carbonyl groups, whereas the multivalent Mn(2+), Co(2+) and Yb(3+) interact with carboxylic groups. This work elucidates the basis of the effect of the Hofmeister cation series on protein solubility.


Strong and specific effects of cations on lysozyme chloride solubility.,Benas P, Legrand L, Ries-Kautt M Acta Crystallogr D Biol Crystallogr. 2002 Oct;58(Pt 10 Pt 1):1582-7. Epub 2002, Sep 26. PMID:12351866<ref>PMID:12351866</ref>
Weak protein-cationic co-ion interactions addressed by X-ray crystallography and mass spectrometry.,Benas P, Auzeil N, Legrand L, Brachet F, Regazzetti A, Ries-Kautt M Acta Crystallogr D Biol Crystallogr. 2014 Aug 1;70(Pt 8):2217-31. doi:, 10.1107/S1399004714011304. Epub 2014 Jul 25. PMID:25084340<ref>PMID:25084340</ref>


From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
<div class="pdbe-citations 4ngv" style="background-color:#fffaf0;"></div>
==See Also==
*[[Lysozyme 3D structures|Lysozyme 3D structures]]
== References ==
== References ==
<references/>
<references/>
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</StructureSection>
</StructureSection>
[[Category: Gallus gallus]]
[[Category: Gallus gallus]]
[[Category: Lysozyme]]
[[Category: Large Structures]]
[[Category: Benas, P.]]
[[Category: Benas P]]
[[Category: Legrand, L.]]
[[Category: Legrand L]]
[[Category: Ries-Kautt, M.]]
[[Category: Ries-Kautt M]]
[[Category: Esi-mass spectrometry]]
[[Category: Hofmeister series]]
[[Category: Hydrolase]]
[[Category: Protein cation interaction]]

Latest revision as of 16:56, 20 September 2023

Previously de-ionized HEW lysozyme batch crystallized in 0.5 M YbCl3

4ngv, resolution 1.64Å

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