3v7e: Difference between revisions

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==Crystal structure of YbxF bound to the SAM-I riboswitch aptamer==
==Crystal structure of YbxF bound to the SAM-I riboswitch aptamer==
<StructureSection load='3v7e' size='340' side='right' caption='[[3v7e]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
<StructureSection load='3v7e' size='340' side='right'caption='[[3v7e]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3v7e]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V7E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3V7E FirstGlance]. <br>
<table><tr><td colspan='2'>[[3v7e]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis] and [https://en.wikipedia.org/wiki/Caldanaerobacter_subterraneus_subsp._tengcongensis Caldanaerobacter subterraneus subsp. tengcongensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V7E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3V7E FirstGlance]. <br>
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NCO:COBALT+HEXAMMINE(III)'>NCO</scene>, <scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene><br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3v7q|3v7q]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NCO:COBALT+HEXAMMINE(III)'>NCO</scene>, <scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BSU01090, rplGB, ybaB, ybxF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3v7e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v7e OCA], [https://pdbe.org/3v7e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3v7e RCSB], [https://www.ebi.ac.uk/pdbsum/3v7e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3v7e ProSAT]</span></td></tr>
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3v7e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v7e OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3v7e RCSB], [http://www.ebi.ac.uk/pdbsum/3v7e PDBsum]</span></td></tr>
</table>
<table>
== Function ==
[https://www.uniprot.org/uniprot/RXL7_BACSU RXL7_BACSU]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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YbxF and YlxQ are bacterial homologs of L7Ae and bind K-turns but not K-loops.,Baird NJ, Zhang J, Hamma T, Ferre-D'Amare AR RNA. 2012 Feb 21. PMID:22355167<ref>PMID:22355167</ref>
YbxF and YlxQ are bacterial homologs of L7Ae and bind K-turns but not K-loops.,Baird NJ, Zhang J, Hamma T, Ferre-D'Amare AR RNA. 2012 Feb 21. PMID:22355167<ref>PMID:22355167</ref>


From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
<div class="pdbe-citations 3v7e" style="background-color:#fffaf0;"></div>
==See Also==
*[[Riboswitch 3D structures|Riboswitch 3D structures]]
== References ==
== References ==
<references/>
<references/>
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</StructureSection>
</StructureSection>
[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
[[Category: Amare, A R.Ferre-D.]]
[[Category: Caldanaerobacter subterraneus subsp. tengcongensis]]
[[Category: Baird, N J.]]
[[Category: Large Structures]]
[[Category: Hamma, T.]]
[[Category: Baird NJ]]
[[Category: Zhang, J.]]
[[Category: Ferre-D'Amare AR]]
[[Category: A member of the l7ae/l30e superfamily]]
[[Category: Hamma T]]
[[Category: K-turn]]
[[Category: Zhang J]]
[[Category: K-turn motif]]
[[Category: L7ae-like]]
[[Category: Ribosomal protein-rna complex]]
[[Category: Riboswitch]]
[[Category: Rna-protein complex]]
[[Category: Unknown function]]
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