Cyclohydrolase: Difference between revisions

Latest revision as of 10:26, 9 June 2024

spinqualitylabelsall models

Structure of GTP cyclohydrolase I pentamer complex with GTP (PDB code 1n3r).

Drag the structure with the mouse to rotate

Export Animated Image Print3D

Function

Cyclohydrolase is an enzyme which catalyzes the reversible cyclization or the ring opening of a purine ring.

• GTP cyclohydrolase I catalyzes the conversion of GTP to 7,8-dihydronepterin triphosphate. GCH I is part of the folate and biopterin biosynthesis^[1]

• GTP cyclohydrolase II catalyzes the conversion of GTP to formate, diphosphate and diamino-hydroxy-phosphoribosylamino pyrimidine. GCH II is part of riboflavin metabolism.^[2]
• IMP cyclohydrolase catalyzes the conversion of IMP to formido-phosphosibosyl imidazole carboxamide. ICH is part of the purine biosynthesis^[3] See also Bifunctional purine biosynthesis protein PURH.
• Methenyltetrahydromethanopterin cyclohydrolase catalyzes the conversion of methenyltetrahydromethanopterin to formyl-tetrahydromethanopterin. MCH is part of the folate biosynthesis^[4]

Methylenetetrahydrofolate dehydrogenase/cyclohydrolase catalyzes the interconversion of 5,10-methylenetetrahydrofolate and 10-formyltetrahydrofolate in mitochondria of mammalian cells.^[5]
Phosphoribosyl AMP-cyclohydrolase catalyzes the third step of His biosynthesis.^[6]

Disease

Mutations in GTP cyclohydrolase I are associated with malignant phenylketonuria, hyperphenylalaninemia and DOPA-responsive dystonia.

Structural highlights

GTP cyclohydrolase I from Escherichia coli (1n3r) is pentamer. GCH I GTP binding pocket at the intersubunit interface.^[7] Surface representation of GCH I GTP binding pocket.

3D structures of cyclohydrolase

Cyclohydrolase 3D structures

↑ Nar H, Huber R, Meining W, Schmid C, Weinkauf S, Bacher A. Atomic structure of GTP cyclohydrolase I. Structure. 1995 May 15;3(5):459-66. PMID:7663943
↑ Ren J, Kotaka M, Lockyer M, Lamb HK, Hawkins AR, Stammers DK. GTP cyclohydrolase II structure and mechanism. J Biol Chem. 2005 Nov 4;280(44):36912-9. Epub 2005 Aug 22. PMID:16115872 doi:10.1074/jbc.M507725200
↑ Kang YN, Tran A, White RH, Ealick SE. A novel function for the N-terminal nucleophile hydrolase fold demonstrated by the structure of an archaeal inosine monophosphate cyclohydrolase. Biochemistry. 2007 May 1;46(17):5050-62. Epub 2007 Apr 4. PMID:17407260 doi:https://dx.doi.org/10.1021/bi061637j
↑ Upadhyay V, Demmer U, Warkentin E, Moll J, Shima S, Ermler U. Structure and catalytic mechanism of N(5),N(10)-methenyl-tetrahydromethanopterin cyclohydrolase. Biochemistry. 2012 Oct 23;51(42):8435-43. doi: 10.1021/bi300777k. Epub 2012 Oct, 8. PMID:23013430 doi:https://dx.doi.org/10.1021/bi300777k
↑ Schmidt A, Wu H, MacKenzie RE, Chen VJ, Bewly JR, Ray JE, Toth JE, Cygler M. Structures of three inhibitor complexes provide insight into the reaction mechanism of the human methylenetetrahydrofolate dehydrogenase/cyclohydrolase. Biochemistry. 2000 May 30;39(21):6325-35. PMID:10828945
↑ D'Ordine RL, Linger RS, Thai CJ, Davisson VJ. Catalytic zinc site and mechanism of the metalloenzyme PR-AMP cyclohydrolase. Biochemistry. 2012 Jul 24;51(29):5791-803. PMID:22741521 doi:10.1021/bi300391m
↑ Rebelo J, Auerbach G, Bader G, Bracher A, Nar H, Hosl C, Schramek N, Kaiser J, Bacher A, Huber R, Fischer M. Biosynthesis of pteridines. Reaction mechanism of GTP cyclohydrolase I. J Mol Biol. 2003 Feb 14;326(2):503-16. PMID:12559918

References

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky

[1] Nar H, Huber R, Meining W, Schmid C, Weinkauf S, Bacher A. Atomic structure of GTP cyclohydrolase I. Structure. 1995 May 15;3(5):459-66. PMID:7663943

[2] Ren J, Kotaka M, Lockyer M, Lamb HK, Hawkins AR, Stammers DK. GTP cyclohydrolase II structure and mechanism. J Biol Chem. 2005 Nov 4;280(44):36912-9. Epub 2005 Aug 22. PMID:16115872 doi:10.1074/jbc.M507725200

[3] Kang YN, Tran A, White RH, Ealick SE. A novel function for the N-terminal nucleophile hydrolase fold demonstrated by the structure of an archaeal inosine monophosphate cyclohydrolase. Biochemistry. 2007 May 1;46(17):5050-62. Epub 2007 Apr 4. PMID:17407260 doi:https://dx.doi.org/10.1021/bi061637j

[4] Upadhyay V, Demmer U, Warkentin E, Moll J, Shima S, Ermler U. Structure and catalytic mechanism of N(5),N(10)-methenyl-tetrahydromethanopterin cyclohydrolase. Biochemistry. 2012 Oct 23;51(42):8435-43. doi: 10.1021/bi300777k. Epub 2012 Oct, 8. PMID:23013430 doi:https://dx.doi.org/10.1021/bi300777k

[5] Schmidt A, Wu H, MacKenzie RE, Chen VJ, Bewly JR, Ray JE, Toth JE, Cygler M. Structures of three inhibitor complexes provide insight into the reaction mechanism of the human methylenetetrahydrofolate dehydrogenase/cyclohydrolase. Biochemistry. 2000 May 30;39(21):6325-35. PMID:10828945

[6] D'Ordine RL, Linger RS, Thai CJ, Davisson VJ. Catalytic zinc site and mechanism of the metalloenzyme PR-AMP cyclohydrolase. Biochemistry. 2012 Jul 24;51(29):5791-803. PMID:22741521 doi:10.1021/bi300391m

[7] Rebelo J, Auerbach G, Bader G, Bracher A, Nar H, Hosl C, Schramek N, Kaiser J, Bacher A, Huber R, Fischer M. Biosynthesis of pteridines. Reaction mechanism of GTP cyclohydrolase I. J Mol Biol. 2003 Feb 14;326(2):503-16. PMID:12559918

[1]

[2]

[3]

[4]

[5]

[6]

[7]

@@ Line 1: / Line 1: @@
-<StructureSection load='1wuq' size='340' side='right' caption='Structure of GTP cyclohydrolase I pentamer complex with 8-oxo-GTP (stick model) and Zn+2 ion (grey) (PDB code [[1wuq]]).' scene=''>
+<StructureSection load='1n3r' size='350' side='right' caption='Structure of GTP cyclohydrolase I pentamer complex with GTP (PDB code [[1n3r]]).' scene='59/595207/Cv/4'>
 == Function ==
-•	'''GTP cyclohydrolase I''' catalyzes the conversion of GTP to 7,8-dihydronepterin triphosphate.  GCH I is part of the folate and biopterin biosynthesis<br />
+'''Cyclohydrolase''' is an enzyme which catalyzes the reversible cyclization or the ring opening of a purine ring.
-•	'''GTP cyclohydrolase II''' catalyzes the conversion of GTP to formate, diphosphate and diamino-hydroxy-phosphoribosylamino pyrimidine. GCH II is part of riboflavin metabolism.  <br />
-•	'''IMP cyclohydrolase''' catalyzes the conversion of IMP to formido-phosphosibosyl imidazole carboxamide.  ICH is part of the purine biosynthesis<br />
+•	'''GTP cyclohydrolase I''' catalyzes the conversion of GTP to 7,8-dihydronepterin triphosphate.  GCH I is part of the folate and biopterin biosynthesis<ref>PMID:7663943</ref> <br />
-•	'''Methenyltetrahydromethanopterin cyclohydrolase''' catalyzes the conversion of methenyltetrahydromethanopterin to formyl-tetrahydromethanopterin.  MCH is part of the folate biosynthesis<br />
+•	'''GTP cyclohydrolase II''' catalyzes the conversion of GTP to formate, diphosphate and diamino-hydroxy-phosphoribosylamino pyrimidine. GCH II is part of riboflavin metabolism.<ref>PMID:16115872</ref>   <br />
+•	'''IMP cyclohydrolase''' catalyzes the conversion of IMP to formido-phosphosibosyl imidazole carboxamide.  ICH is part of the purine biosynthesis<ref>PMID:17407260</ref> See also [[Bifunctional purine biosynthesis protein PURH]].<br />
+•	'''Methenyltetrahydromethanopterin cyclohydrolase''' catalyzes the conversion of methenyltetrahydromethanopterin to formyl-tetrahydromethanopterin.  MCH is part of the folate biosynthesis<ref>PMID:23013430</ref> <br />
+*'''Methylenetetrahydrofolate dehydrogenase/cyclohydrolase''' catalyzes the interconversion of 5,10-methylenetetrahydrofolate and 10-formyltetrahydrofolate in mitochondria of mammalian cells.<ref>PMID:10828945</ref>
+*'''Phosphoribosyl AMP-cyclohydrolase''' catalyzes the third step of His biosynthesis.<ref>PMID:22741521</ref>
 == Disease ==
-== Relevance ==
+Mutations in GTP cyclohydrolase I are associated with malignant phenylketonuria, hyperphenylalaninemia and DOPA-responsive dystonia.
 == Structural highlights ==
+<scene name='59/595207/Cv/7'>GTP cyclohydrolase I</scene> from ''Escherichia coli'' ([[1n3r]]) is pentamer. <scene name='59/595207/Cv/8'>GCH I GTP binding pocket</scene> at the intersubunit interface.<ref>PMID:12559918</ref> <scene name='59/595207/Cv/9'>Surface representation of GCH I GTP binding pocket</scene>.
 ==3D structures of cyclohydrolase==
+[[Cyclohydrolase 3D structures]]
-Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
+</StructureSection>
-===GTP cyclohydrolase I===
-[[1gtp]] – EcGCH I – ''Escherichia coli''<br />
-[[3d1t]] – NgGCH IB + Zn – ''Neisseria gonorrhoeae''<br />
-[[3d2o]] – NgGCH IB + Mn<br />
-[[1fb1]] – hGCH I + Zn – human<br />
-[[1wm9]] – TtGCH I + Zn – ''Thermus thermophilus''<br />
-''GTP cyclohydrolase I complexes''
-[[1a8r]], [[1a9c]], [[1n3r]], [[1n3t]], [[1n3s]] – EcGCH I (mutant) + GTP <br />
-[[4du6]] – GCH I + GTP – ''Yersinia pseudotuberculosis''<br />
-[[1fbx]] – EcGCH I + Zn <br />
-[[1wuq]], [[1wur]] – TtGCH I + Zn + 8-oxo-GTP <br />
-[[1is7]] – rGCH I + GCH feedback regulatory protein - rat<br />
-[[1is8]] – rGCH I + GCH feedback regulatory protein + Zn<br />
-[[1wpl]] – rGCH I + GCH feedback regulatory protein + Zn + dihydrobiopterin<br />
-===GTP cyclohydrolase II===
-[[2bz1]] – EcGCH II + Zn <br />
-[[2bz0]] – EcGCH II + Zn + phosphomethylphosphonic acid guanylate<br />
-===GTP cyclohydrolase III===
-[[2qv6]] – GCH III + GTP + Ca – ''Methanocaldococcus jannaschii'' <br />
-===IMP cyclohydrolase===
-[[2ntm]] – MtICH – ''Methanothermobacter thermoautotrophicus''<br />
-[[2ntk]] – MtICH + IMP <br />
-[[2ntl]] – MtICH + AICAR<br />
-===Methenyltetrahydromethanopterin cyclohydrolase===
-[[1qlm]] – MCH – ''Methanopyrus kandleri''<br />
-[[4gvr]] – AfMCH – ''Archaeoglobus fulgidus''<br />
-[[4gvq]] – AfMCH + tetrahydromethanopterin <br />
-[[4gvs]] – AfMCH + N5-formyl-tetrahydromethanopterin <br />
-===Phosphoribosyl-ATP cyclohydrolase===
-[[1zps]] – MtPCH + Cd <br />
 == References ==

Cyclohydrolase: Difference between revisions

Latest revision as of 10:26, 9 June 2024

Contents

Function

Disease

Structural highlights

3D structures of cyclohydrolase

References

Proteopedia Page Contributors and Editors (what is this?)

Navigation menu

Page actions

Page actions

Personal tools

Navigation

Search

Tools