4cj9: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
No edit summary
OCA (talk | contribs)
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
==BurrH DNA-binding protein from Burkholderia rhizoxinica in its apo form==
==BurrH DNA-binding protein from Burkholderia rhizoxinica in its apo form==
<StructureSection load='4cj9' size='340' side='right' caption='[[4cj9]], [[Resolution|resolution]] 2.21&Aring;' scene=''>
<StructureSection load='4cj9' size='340' side='right'caption='[[4cj9]], [[Resolution|resolution]] 2.21&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4cj9]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4CJ9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4CJ9 FirstGlance]. <br>
<table><tr><td colspan='2'>[[4cj9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycetohabitans_rhizoxinica Mycetohabitans rhizoxinica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4CJ9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4CJ9 FirstGlance]. <br>
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SE:SELENIUM+ATOM'>SE</scene><br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.214&#8491;</td></tr>
<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SE:SELENIUM+ATOM'>SE</scene></td></tr>
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4cja|4cja]]</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4cj9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4cj9 OCA], [https://pdbe.org/4cj9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4cj9 RCSB], [https://www.ebi.ac.uk/pdbsum/4cj9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4cj9 ProSAT]</span></td></tr>
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4cj9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4cj9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4cj9 RCSB], [http://www.ebi.ac.uk/pdbsum/4cj9 PDBsum]</span></td></tr>
</table>
<table>
== Function ==
[https://www.uniprot.org/uniprot/BAT1_MYCRK BAT1_MYCRK] Binds to dsDNA in a sequence-specific manner. Also binds a DNA/RNA duplex when the recognized sequence is in the DNA strand. Each tandem core repeat recognizes a single nucleotide in the target DNA via its base-specifying residue (BSR, residue 13 of each repeat); altering this amino acid changes sequence specificity.<ref>PMID:24792163</ref> <ref>PMID:25004980</ref>  
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 16: Line 18:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
<div class="pdbe-citations 4cj9" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Campos-Olivas, R.]]
[[Category: Large Structures]]
[[Category: Duchateau, P.]]
[[Category: Mycetohabitans rhizoxinica]]
[[Category: Lopez-Mendez, B.]]
[[Category: Campos-Olivas R]]
[[Category: Molina, R.]]
[[Category: Duchateau P]]
[[Category: Montoya, G.]]
[[Category: Lopez-Mendez B]]
[[Category: Stella, S.]]
[[Category: Molina R]]
[[Category: Gene targeting]]
[[Category: Montoya G]]
[[Category: Protein-dna interaction]]
[[Category: Stella S]]
[[Category: Transcription]]