1dfm: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
No edit summary
OCA (talk | contribs)
No edit summary
 
(8 intermediate revisions by the same user not shown)
Line 1: Line 1:
==Crystal structure of restriction endonuclease BGLII complexed with DNA 16-mer==
==Crystal structure of restriction endonuclease BGLII complexed with DNA 16-mer==
<StructureSection load='1dfm' size='340' side='right' caption='[[1dfm]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
<StructureSection load='1dfm' size='340' side='right'caption='[[1dfm]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1dfm]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DFM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DFM FirstGlance]. <br>
<table><tr><td colspan='2'>[[1dfm]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DFM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DFM FirstGlance]. <br>
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene><br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1d2i|1d2i]], [[1bhm|1bhm]]</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dfm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dfm OCA], [https://pdbe.org/1dfm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dfm RCSB], [https://www.ebi.ac.uk/pdbsum/1dfm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dfm ProSAT]</span></td></tr>
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dfm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dfm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1dfm RCSB], [http://www.ebi.ac.uk/pdbsum/1dfm PDBsum]</span></td></tr>
</table>
<table>
== Function ==
[https://www.uniprot.org/uniprot/T2B2_BACIU T2B2_BACIU] Recognizes the double-stranded sequence AGATCT and cleaves after A-1.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 16: Line 18:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
<div class="pdbe-citations 1dfm" style="background-color:#fffaf0;"></div>


==See Also==
==See Also==
*[[Endonuclease|Endonuclease]]
*[[Endonuclease 3D structures|Endonuclease 3D structures]]
== References ==
== References ==
<references/>
<references/>
Line 24: Line 27:
</StructureSection>
</StructureSection>
[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
[[Category: Aggarwal, A K.]]
[[Category: Large Structures]]
[[Category: Kucera, R.]]
[[Category: Aggarwal AK]]
[[Category: Lukacs, C M.]]
[[Category: Kucera R]]
[[Category: Schildkraut, I.]]
[[Category: Lukacs CM]]
[[Category: Hydrolase-dna complex]]
[[Category: Schildkraut I]]
[[Category: Protein-dna complex]]
[[Category: Restriction endonuclease]]
[[Category: Restriction enzyme]]