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==Crystal structure of nucleoside diphosphate kinase from Haloarcula quadrata==
==Crystal structure of nucleoside diphosphate kinase from Haloarcula quadrata==
<StructureSection load='2zua' size='340' side='right' caption='[[2zua]], [[Resolution|resolution]] 2.59&Aring;' scene=''>
<StructureSection load='2zua' size='340' side='right'caption='[[2zua]], [[Resolution|resolution]] 2.59&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2zua]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Haloarcula_quadrata Haloarcula quadrata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZUA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZUA FirstGlance]. <br>
<table><tr><td colspan='2'>[[2zua]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Haloarcula_quadrata Haloarcula quadrata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZUA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZUA FirstGlance]. <br>
</td></tr><tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ndk ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=182779 Haloarcula quadrata])</td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.59&#8491;</td></tr>
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zua FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zua OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zua RCSB], [http://www.ebi.ac.uk/pdbsum/2zua PDBsum]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zua FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zua OCA], [https://pdbe.org/2zua PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zua RCSB], [https://www.ebi.ac.uk/pdbsum/2zua PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zua ProSAT]</span></td></tr>
<table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q401C5_9EURY Q401C5_9EURY] Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate (By similarity).[HAMAP-Rule:MF_00451]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zu/2zua_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zu/2zua_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zua ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
<div class="pdbe-citations 2zua" style="background-color:#fffaf0;"></div>


==See Also==
==See Also==
*[[Nucleoside diphosphate kinase|Nucleoside diphosphate kinase]]
*[[Nucleoside diphosphate kinase 3D structures|Nucleoside diphosphate kinase 3D structures]]
== References ==
== References ==
<references/>
<references/>
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</StructureSection>
</StructureSection>
[[Category: Haloarcula quadrata]]
[[Category: Haloarcula quadrata]]
[[Category: Ichimura, T.]]
[[Category: Large Structures]]
[[Category: Miyazono, K.]]
[[Category: Ichimura T]]
[[Category: Nagata, K.]]
[[Category: Miyazono K]]
[[Category: Ohtsuka, J.]]
[[Category: Nagata K]]
[[Category: Okai, M.]]
[[Category: Ohtsuka J]]
[[Category: Tanokura, M.]]
[[Category: Okai M]]
[[Category: Yamamura, A.]]
[[Category: Tanokura M]]
[[Category: Ferredoxin fold]]
[[Category: Yamamura A]]
[[Category: Kinase]]
[[Category: Kpn loop]]
[[Category: Transferase]]
Retrieved from "https://proteopedia.org/2zua"