2a48: Difference between revisions

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==Crystal structure of amFP486 E150Q==
==Crystal structure of amFP486 E150Q==
<StructureSection load='2a48' size='340' side='right' caption='[[2a48]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
<StructureSection load='2a48' size='340' side='right'caption='[[2a48]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2a48]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Anemonia_majano Anemonia majano]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A48 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2A48 FirstGlance]. <br>
<table><tr><td colspan='2'>[[2a48]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Anemonia_manjano Anemonia manjano]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A48 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2A48 FirstGlance]. <br>
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene><br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CR7:[(4Z)-2-[(1S)-1,5-DIAMINOPENTYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>CR7</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=CR7:[(4Z)-2-[(1S)-1,5-DIAMINOPENTYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>CR7</scene></td></tr>
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2a46|2a46]], [[2a47|2a47]]</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2a48 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a48 OCA], [https://pdbe.org/2a48 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2a48 RCSB], [https://www.ebi.ac.uk/pdbsum/2a48 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2a48 ProSAT]</span></td></tr>
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a48 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a48 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2a48 RCSB], [http://www.ebi.ac.uk/pdbsum/2a48 PDBsum]</span></td></tr>
</table>
<table>
== Function ==
[https://www.uniprot.org/uniprot/GFPL_ANEMA GFPL_ANEMA] Pigment protein that is green in color.<ref>PMID:10504696</ref>  
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a4/2a48_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a4/2a48_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2a48 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
<div class="pdbe-citations 2a48" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Anemonia majano]]
[[Category: Anemonia manjano]]
[[Category: Henderson, J N.]]
[[Category: Large Structures]]
[[Category: Remington, S J.]]
[[Category: Henderson JN]]
[[Category: Beta barrel]]
[[Category: Remington SJ]]
[[Category: Luminescent protein]]

Latest revision as of 07:59, 19 March 2026

Crystal structure of amFP486 E150Q

2a48, resolution 2.00Å

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