2jra: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
No edit summary
OCA (talk | contribs)
No edit summary
 
(6 intermediate revisions by the same user not shown)
Line 1: Line 1:
==A novel domain-swapped solution NMR structure of protein RPA2121 from Rhodopseudomonas palustris. Northeast Structural Genomics Target RpT6==
==A novel domain-swapped solution NMR structure of protein RPA2121 from Rhodopseudomonas palustris. Northeast Structural Genomics Target RpT6==
<StructureSection load='2jra' size='340' side='right' caption='[[2jra]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
<StructureSection load='2jra' size='340' side='right'caption='[[2jra]]' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2jra]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodopseudomonas_palustris Rhodopseudomonas palustris]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JRA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JRA FirstGlance]. <br>
<table><tr><td colspan='2'>[[2jra]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodopseudomonas_palustris_CGA009 Rhodopseudomonas palustris CGA009]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JRA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JRA FirstGlance]. <br>
</td></tr><tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RPA2121 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1076 Rhodopseudomonas palustris])</td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jra FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jra OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jra RCSB], [http://www.ebi.ac.uk/pdbsum/2jra PDBsum], [http://www.topsan.org/Proteins/NESGC/2jra TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jra FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jra OCA], [https://pdbe.org/2jra PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jra RCSB], [https://www.ebi.ac.uk/pdbsum/2jra PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jra ProSAT], [https://www.topsan.org/Proteins/NESGC/2jra TOPSAN]</span></td></tr>
<table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q6N7Y3_RHOPA Q6N7Y3_RHOPA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jr/2jra_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jr/2jra_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jra ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Rhodopseudomonas palustris]]
[[Category: Large Structures]]
[[Category: Arrowsmith, C H.]]
[[Category: Rhodopseudomonas palustris CGA009]]
[[Category: Bansal, S.]]
[[Category: Arrowsmith CH]]
[[Category: Cort, J.]]
[[Category: Bansal S]]
[[Category: Guido, V.]]
[[Category: Cort J]]
[[Category: Kennedy, M A.]]
[[Category: Guido V]]
[[Category: Lemak, A.]]
[[Category: Kennedy MA]]
[[Category: NESG, Northeast Structural Genomics Consortium.]]
[[Category: Lemak A]]
[[Category: Prestegard, J H.]]
[[Category: Prestegard JH]]
[[Category: Semest, A.]]
[[Category: Semest A]]
[[Category: Wu, B.]]
[[Category: Wu B]]
[[Category: Yee, A.]]
[[Category: Yee A]]
[[Category: Domain-swapped dimer]]
[[Category: Nesg]]
[[Category: Northeast structural genomics consortium]]
[[Category: Protein structure initiative]]
[[Category: Psi]]
[[Category: Structural genomic]]
[[Category: Unknown function]]