2ftp: Difference between revisions
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==Crystal Structure of hydroxymethylglutaryl-CoA lyase from Pseudomonas aeruginosa== | ==Crystal Structure of hydroxymethylglutaryl-CoA lyase from Pseudomonas aeruginosa== | ||
<StructureSection load='2ftp' size='340' side='right' caption='[[2ftp]], [[Resolution|resolution]] 2.40Å' scene=''> | <StructureSection load='2ftp' size='340' side='right'caption='[[2ftp]], [[Resolution|resolution]] 2.40Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2ftp]] is a 1 chain structure with sequence from [ | <table><tr><td colspan='2'>[[2ftp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_PAO1 Pseudomonas aeruginosa PAO1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FTP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FTP FirstGlance]. <br> | ||
</td></tr><tr><td class="sblockLbl"><b>[[ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4Å</td></tr> | ||
<tr><td class="sblockLbl"><b> | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | ||
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ftp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ftp OCA], [https://pdbe.org/2ftp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ftp RCSB], [https://www.ebi.ac.uk/pdbsum/2ftp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ftp ProSAT], [https://www.topsan.org/Proteins/MCSG/2ftp TOPSAN]</span></td></tr> | ||
<table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/LIUE_PSEAE LIUE_PSEAE] Involved in the L-leucine, isovalerate and acyclic monoterpene catabolism. Catalyzes the cleavage of 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) to yield acetyl-CoA and acetoacetate. It can also catalyze the cleavage of 3-hydroxy-3-isohexenylglutaryl-CoA (HIHG_CoA) to yield 7-methyl-3-oxooct-6-enoyl-CoA and acetate.<ref>PMID:19459965</ref> <ref>PMID:19597963</ref> | |||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ft/2ftp_consurf.spt"</scriptWhenChecked> | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ft/2ftp_consurf.spt"</scriptWhenChecked> | ||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ftp ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
== References == | |||
<references/> | |||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Large Structures]] | ||
[[Category: Pseudomonas aeruginosa | [[Category: Pseudomonas aeruginosa PAO1]] | ||
[[Category: Edwards | [[Category: Edwards A]] | ||
[[Category: Evdokimova | [[Category: Evdokimova E]] | ||
[[Category: Kudritska | [[Category: Kudritska M]] | ||
[[Category: Liu | [[Category: Liu Y]] | ||
[[Category: Pai EF]] | |||
[[Category: Pai | [[Category: Savchenko A]] | ||
[[Category: Savchenko | [[Category: Xiao T]] | ||
[[Category: Xiao | |||
Latest revision as of 09:31, 30 August 2023
Crystal Structure of hydroxymethylglutaryl-CoA lyase from Pseudomonas aeruginosa
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