2v09: Difference between revisions

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==SENS161-164DSSN MUTANT OF BACILLUS SUBTILIS OXALATE DECARBOXYLASE OXDC==
 
<StructureSection load='2v09' size='340' side='right' caption='[[2v09]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
==SENS161-164DSSN mutant of Bacillus subtilis Oxalate Decarboxylase OxdC==
<StructureSection load='2v09' size='340' side='right'caption='[[2v09]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2v09]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V09 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V09 FirstGlance]. <br>
<table><tr><td colspan='2'>[[2v09]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V09 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V09 FirstGlance]. <br>
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene><br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1j58|1j58]], [[1l3j|1l3j]], [[1uw8|1uw8]], [[2uy8|2uy8]], [[2uy9|2uy9]], [[2uya|2uya]], [[2uyb|2uyb]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Oxalate_decarboxylase Oxalate decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.2 4.1.1.2] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v09 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v09 OCA], [https://pdbe.org/2v09 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v09 RCSB], [https://www.ebi.ac.uk/pdbsum/2v09 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v09 ProSAT]</span></td></tr>
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v09 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v09 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2v09 RCSB], [http://www.ebi.ac.uk/pdbsum/2v09 PDBsum]</span></td></tr>
</table>
<table>
== Function ==
[https://www.uniprot.org/uniprot/OXDC_BACSU OXDC_BACSU] Converts oxalate to formate and CO(2) in an O(2)-dependent reaction. Can also catalyze minor side reactions: oxalate oxidation to produce H(2)O(2), and oxalate-dependent, H(2)O(2)-independent dye oxidations.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v0/2v09_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v0/2v09_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2v09 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
<div class="pdbe-citations 2v09" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
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</StructureSection>
</StructureSection>
[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
[[Category: Oxalate decarboxylase]]
[[Category: Large Structures]]
[[Category: Bornemann, S.]]
[[Category: Bornemann S]]
[[Category: Bowater, L.]]
[[Category: Bowater L]]
[[Category: Burrell, M R.]]
[[Category: Burrell MR]]
[[Category: Fairhurst, S A.]]
[[Category: Fairhurst SA]]
[[Category: Just, V J.]]
[[Category: Just VJ]]
[[Category: Lawson, D M.]]
[[Category: Lawson DM]]
[[Category: Requena, L.]]
[[Category: Requena L]]
[[Category: Cupin]]
[[Category: Decarboxylase]]
[[Category: Formate]]
[[Category: Lyase]]
[[Category: Manganese]]
[[Category: Metal binding protein]]
[[Category: Metal-binding]]
[[Category: Oxalate]]
[[Category: Oxidase]]
[[Category: Rational mutagenesis]]
[[Category: Sens161-164dssn mutant]]
Retrieved from "https://proteopedia.org/2v09"