2hmc: Difference between revisions
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==The Crystal Structure of Dihydrodipicolinate Synthase DapA from Agrobacterium tumefaciens== | ==The Crystal Structure of Dihydrodipicolinate Synthase DapA from Agrobacterium tumefaciens== | ||
<StructureSection load='2hmc' size='340' side='right' caption='[[2hmc]], [[Resolution|resolution]] 1.90Å' scene=''> | <StructureSection load='2hmc' size='340' side='right'caption='[[2hmc]], [[Resolution|resolution]] 1.90Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2hmc]] is a 1 chain structure with sequence from [ | <table><tr><td colspan='2'>[[2hmc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HMC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HMC FirstGlance]. <br> | ||
</td></tr><tr><td class="sblockLbl"><b>[[ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9Å</td></tr> | ||
<tr><td class="sblockLbl"><b>[[ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hmc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hmc OCA], [https://pdbe.org/2hmc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hmc RCSB], [https://www.ebi.ac.uk/pdbsum/2hmc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hmc ProSAT], [https://www.topsan.org/Proteins/MCSG/2hmc TOPSAN]</span></td></tr> | |||
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | </table> | ||
<table> | == Function == | ||
[https://www.uniprot.org/uniprot/A9CGZ4_AGRFC A9CGZ4_AGRFC] | |||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hm/2hmc_consurf.spt"</scriptWhenChecked> | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hm/2hmc_consurf.spt"</scriptWhenChecked> | ||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/ | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2hmc ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Agrobacterium | [[Category: Agrobacterium fabrum str. C58]] | ||
[[Category: | [[Category: Large Structures]] | ||
[[Category: | [[Category: Joachimiak A]] | ||
[[Category: | [[Category: Kim Y]] | ||
[[Category: Savchenko | [[Category: Savchenko A]] | ||
[[Category: Xu | [[Category: Xu X]] | ||
[[Category: Zhang | [[Category: Zhang R]] | ||
[[Category: Zheng | [[Category: Zheng H]] | ||
Latest revision as of 08:08, 30 October 2024
The Crystal Structure of Dihydrodipicolinate Synthase DapA from Agrobacterium tumefaciens
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