348d: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
==X-RAY CRYSTAL STRUCTURES OF THE DECAMER DGACCGCGGTC: LOW SALT CONCENTRATION==
==X-RAY CRYSTAL STRUCTURES OF THE DECAMER DGACCGCGGTC: LOW SALT CONCENTRATION==
<StructureSection load='348d' size='340' side='right' caption='[[348d]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
<StructureSection load='348d' size='340' side='right'caption='[[348d]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[348d]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=348D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=348D FirstGlance]. <br>
<table><tr><td colspan='2'>[[348d]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=348D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=348D FirstGlance]. <br>
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=348d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=348d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=348d RCSB], [http://www.ebi.ac.uk/pdbsum/348d PDBsum]</span></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=348d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=348d OCA], [https://pdbe.org/348d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=348d RCSB], [https://www.ebi.ac.uk/pdbsum/348d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=348d ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The X-ray crystal structure of the DNA decamer d(GACCGCGGTC), containing half the human papilloma virus E2 binding site, has been solved from two crystals grown at different ionic conditions (50 mM MgCl2and 50 mM spermine or 1.56 mM MgCl2and 1.56 mM spermine). Despite the variation in salt concentration, the two DNA structures are in a very similar, A-type DNA conformation, with helical axes curving towards the major groove. Although the salt concentrations do not effect the helical parameters or hydration to a large degree, there is a change in the overall helical curvature; 18 degrees and 31 degrees for the low and high salt structures, respectively. This curvature appears to be sequence specific and biologically relevant when compared with similar DNA structures, including the E2 binding site of a protein-DNA complex.
X-ray crystal structures of half the human papilloma virus E2 binding site: d(GACCGCGGTC).,Finley JB, Luo M Nucleic Acids Res. 1998 Dec 15;26(24):5719-27. PMID:9838004<ref>PMID:9838004</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Finley, J B.]]
[[Category: Large Structures]]
[[Category: Luo, M.]]
[[Category: Finley JB]]
[[Category: A-dna]]
[[Category: Luo M]]
[[Category: Dna]]
[[Category: Double helix]]
Retrieved from "https://proteopedia.org/348d"