3dv2: Difference between revisions

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==Crystal Structure of nicotinic acid mononucleotide adenylyltransferase from Bacillus anthracis==
==Crystal Structure of nicotinic acid mononucleotide adenylyltransferase from Bacillus anthracis==
<StructureSection load='3dv2' size='340' side='right' caption='[[3dv2]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
<StructureSection load='3dv2' size='340' side='right'caption='[[3dv2]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3dv2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_anthracis Bacillus anthracis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DV2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DV2 FirstGlance]. <br>
<table><tr><td colspan='2'>[[3dv2]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_anthracis Bacillus anthracis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DV2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DV2 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">nadD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1392 Bacillus anthracis])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nicotinate-nucleotide_adenylyltransferase Nicotinate-nucleotide adenylyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.18 2.7.7.18] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dv2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dv2 OCA], [https://pdbe.org/3dv2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dv2 RCSB], [https://www.ebi.ac.uk/pdbsum/3dv2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dv2 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dv2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dv2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dv2 RCSB], [http://www.ebi.ac.uk/pdbsum/3dv2 PDBsum]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
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Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dv/3dv2_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dv/3dv2_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dv2 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 
<div class="pdbe-citations 3dv2" style="background-color:#fffaf0;"></div>
==See Also==
*[[P73|P73]]
== References ==
== References ==
<references/>
<references/>
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</StructureSection>
</StructureSection>
[[Category: Bacillus anthracis]]
[[Category: Bacillus anthracis]]
[[Category: Nicotinate-nucleotide adenylyltransferase]]
[[Category: Large Structures]]
[[Category: Brouillette, C G.]]
[[Category: Brouillette CG]]
[[Category: Brouillette, W J.]]
[[Category: Brouillette WJ]]
[[Category: DeLucas, L J.]]
[[Category: DeLucas LJ]]
[[Category: Lu, S.]]
[[Category: Lu S]]
[[Category: McCombs, D P.]]
[[Category: McCombs DP]]
[[Category: Nagy, L.]]
[[Category: Nagy L]]
[[Category: Pruett, P S.]]
[[Category: Pruett PS]]
[[Category: Smith, C D.]]
[[Category: Smith CD]]
[[Category: Yang, Z.]]
[[Category: Yang Z]]
[[Category: Alpha and beta protein]]
[[Category: Nad]]
[[Category: Nucleotidyltransferase]]
[[Category: Pyridine nucleotide biosynthesis]]
[[Category: Rossmann fold]]
[[Category: Transferase]]