User:Wayne Decatur/SecStrFadeIn: Difference between revisions
From Proteopedia
Jump to navigationJump to search
mNo edit summary |
m add see also section |
||
| (11 intermediate revisions by the same user not shown) | |||
| Line 2: | Line 2: | ||
==Constructing animation== | ==Constructing animation== | ||
<Structure load='Insert PDB code or filename here' size='350' frame='true' align='right' caption='.' scene='60/607777/Surf_test/1' pspeed='8' /> | <Structure load='Insert PDB code or filename here' size='350' frame='true' align='right' caption='.' scene='60/607777/Surf_test/1' pspeed='8' /> | ||
<scene name='60/609822/1dtg_ball_stick_label/1'>1dtg ball and stick - STARTING SCENE</scene> | <scene name='60/609822/1dtg_ball_stick_label/1'>1dtg ball and stick - STARTING SCENE</scene> | ||
| Line 70: | Line 69: | ||
delay 4.0; | delay 4.0; | ||
echo "The repeating patterns of the secondary structure|elements are starting to be noticeable."; | echo "The repeating patterns of the secondary structure|elements are starting to be noticeable."; | ||
delay | delay 3.0; | ||
select protein; | select protein; | ||
echo "To help with observing the patterns,|a tube tracing the backbone is revealed. "; | echo "To help with observing the patterns,|a tube tracing the backbone is revealed. "; | ||
| Line 77: | Line 76: | ||
var c = [0.55,0.5,0.4,0.2, 0.1,0.05,0.01]; for(var k IN c) {spacefill @k; wireframe @k; delay 0.4;}; | var c = [0.55,0.5,0.4,0.2, 0.1,0.05,0.01]; for(var k IN c) {spacefill @k; wireframe @k; delay 0.4;}; | ||
wireframe off; spacefill off; | wireframe off; spacefill off; | ||
echo "Finally fade in typical representation and coloring of the secondary structure. "; | echo "Finally fade in typical representation and|coloring of the secondary structure. "; | ||
color cartoon | color cartoon structure; | ||
var d = [0.55,0.5,0.4,0.2, 0.1,0.05,0.01]; for(var | var d = [0.55,0.5,0.4,0.2, 0.1,0.05,0.01]; for(var m IN d) { var n = 0.56 - m;cartoon @n; color cartoon translucent @n; trace @m; delay 0.4;}; | ||
trace off; cartoon on; | trace off; delay 0.15; color cartoon translucent 0; cartoon on; | ||
</script> | </script> | ||
<text>Added 4th part of progression from all atoms to cartoon</text> | <text>Added 4th part of progression from all atoms to cartoon</text> | ||
| Line 114: | Line 113: | ||
== Extras == | == Extras == | ||
{{Link Toggle FancyCartoonHighQualityView}} | {{Link Toggle FancyCartoonHighQualityView}} | ||
== References == | == References == | ||
<references/> | <references/> | ||
==See Also== | |||
* [[Proteopedia:Cookbook]] | |||
* [[Jmol/Interactivity]] | |||
