3fif: Difference between revisions
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==Crystal structure of the ygdR protein from E.coli. Northeast Structural Genomics target ER382A.== | ==Crystal structure of the ygdR protein from E.coli. Northeast Structural Genomics target ER382A.== | ||
<StructureSection load='3fif' size='340' side='right' caption='[[3fif]], [[Resolution|resolution]] 2.70Å' scene=''> | <StructureSection load='3fif' size='340' side='right'caption='[[3fif]], [[Resolution|resolution]] 2.70Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[3fif]] is a 9 chain structure with sequence from [ | <table><tr><td colspan='2'>[[3fif]] is a 9 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FIF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FIF FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7Å</td></tr> | ||
<tr id=' | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fif FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fif OCA], [https://pdbe.org/3fif PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fif RCSB], [https://www.ebi.ac.uk/pdbsum/3fif PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fif ProSAT]</span></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | |||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/YGDR_ECOLI YGDR_ECOLI] | |||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fi/3fif_consurf.spt"</scriptWhenChecked> | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fi/3fif_consurf.spt"</scriptWhenChecked> | ||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/ | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3fif ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Escherichia coli]] | [[Category: Escherichia coli]] | ||
[[Category: Escherichia coli | [[Category: Escherichia coli K-12]] | ||
[[Category: Acton | [[Category: Large Structures]] | ||
[[Category: Baran | [[Category: Acton TB]] | ||
[[Category: Chen | [[Category: Baran M]] | ||
[[Category: Cunningham | [[Category: Chen CX]] | ||
[[Category: Hunt | [[Category: Cunningham K]] | ||
[[Category: Jiang | [[Category: Hunt JF]] | ||
[[Category: Kuzin | [[Category: Jiang M]] | ||
[[Category: Liu | [[Category: Kuzin AP]] | ||
[[Category: Ma | [[Category: Liu JC]] | ||
[[Category: Montelione | [[Category: Ma L]] | ||
[[Category: Montelione GT]] | |||
[[Category: Rossi | [[Category: Rossi P]] | ||
[[Category: Rost | [[Category: Rost B]] | ||
[[Category: Seetharaman | [[Category: Seetharaman J]] | ||
[[Category: Su | [[Category: Su M]] | ||
[[Category: Swapna | [[Category: Swapna GVT]] | ||
[[Category: Tong | [[Category: Tong L]] | ||
[[Category: Xiao | [[Category: Xiao R]] | ||
Latest revision as of 01:48, 21 November 2024
Crystal structure of the ygdR protein from E.coli. Northeast Structural Genomics target ER382A.
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