3dnn: Difference between revisions
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==Molecular structure for the HIV-1 gp120 trimer in the unliganded state== | ==Molecular structure for the HIV-1 gp120 trimer in the unliganded state== | ||
< | <SX load='3dnn' size='340' side='right' viewer='molstar' caption='[[3dnn]], [[Resolution|resolution]] 20.00Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[3dnn]] is a 9 chain structure with sequence from [ | <table><tr><td colspan='2'>[[3dnn]] is a 9 chain structure with sequence from [https://en.wikipedia.org/wiki/HIV-1_M:B_HXB2R HIV-1 M:B_HXB2R]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DNN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DNN FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 20Å</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dnn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dnn OCA], [https://pdbe.org/3dnn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dnn RCSB], [https://www.ebi.ac.uk/pdbsum/3dnn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dnn ProSAT]</span></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | |||
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
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Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dn/3dnn_consurf.spt"</scriptWhenChecked> | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dn/3dnn_consurf.spt"</scriptWhenChecked> | ||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/ | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dnn ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
| Line 25: | Line 25: | ||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
<div class="pdbe-citations 3dnn" style="background-color:#fffaf0;"></div> | |||
==See Also== | ==See Also== | ||
*[[Gp120|Gp120 | *[[Gp120 3D structures|Gp120 3D structures]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</ | </SX> | ||
[[Category: | [[Category: HIV-1 M:B_HXB2R]] | ||
[[Category: Bartesaghi | [[Category: Large Structures]] | ||
[[Category: Borgnia | [[Category: Bartesaghi A]] | ||
[[Category: Liu | [[Category: Borgnia MJ]] | ||
[[Category: Sapiro | [[Category: Liu J]] | ||
[[Category: Subramaniam | [[Category: Sapiro G]] | ||
[[Category: Subramaniam S]] | |||
Latest revision as of 01:43, 21 November 2024
Molecular structure for the HIV-1 gp120 trimer in the unliganded state
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