3i9s: Difference between revisions

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==Structure from the mobile metagenome of V.cholerae. Integron cassette protein VCH_CASS6==
==Structure from the mobile metagenome of V.cholerae. Integron cassette protein VCH_CASS6==
<StructureSection load='3i9s' size='340' side='right' caption='[[3i9s]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
<StructureSection load='3i9s' size='340' side='right'caption='[[3i9s]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3i9s]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I9S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3I9S FirstGlance]. <br>
<table><tr><td colspan='2'>[[3i9s]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I9S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3I9S FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">A59_A0465 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=666 Vibrio cholerae])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3i9s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i9s OCA], [https://pdbe.org/3i9s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3i9s RCSB], [https://www.ebi.ac.uk/pdbsum/3i9s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3i9s ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3i9s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i9s OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3i9s RCSB], [http://www.ebi.ac.uk/pdbsum/3i9s PDBsum]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
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Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i9/3i9s_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i9/3i9s_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3i9s ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Vibrio cholerae]]
[[Category: Vibrio cholerae]]
[[Category: Boucher, Y]]
[[Category: Boucher Y]]
[[Category: Chang, C]]
[[Category: Chang C]]
[[Category: Cui, H]]
[[Category: Cui H]]
[[Category: Curmi, P M.G]]
[[Category: Curmi PMG]]
[[Category: Deshpande, C N]]
[[Category: Deshpande CN]]
[[Category: Edwards, A]]
[[Category: Edwards A]]
[[Category: Harrop, S J]]
[[Category: Harrop SJ]]
[[Category: Joachimiak, A]]
[[Category: Joachimiak A]]
[[Category: Structural genomic]]
[[Category: Mabbutt BC]]
[[Category: Mabbutt, B C]]
[[Category: Savchenko A]]
[[Category: Savchenko, A]]
[[Category: Stokes HW]]
[[Category: Stokes, H W]]
[[Category: Sureshan V]]
[[Category: Sureshan, V]]
[[Category: Xu X]]
[[Category: Xu, X]]
[[Category: Acetyltransferase]]
[[Category: Integron cassette protein]]
[[Category: Mcsg]]
[[Category: Oyster pond]]
[[Category: PSI, Protein structure initiative]]
[[Category: Transferase]]
[[Category: Woods hole]]
Retrieved from "https://proteopedia.org/3i9s"