1rb9: Difference between revisions

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[[Image:1rb9.gif|left|200px]]


{{Structure
==RUBREDOXIN FROM DESULFOVIBRIO VULGARIS REFINED ANISOTROPICALLY AT 0.92 ANGSTROMS RESOLUTION==
|PDB= 1rb9 |SIZE=350|CAPTION= <scene name='initialview01'>1rb9</scene>, resolution 0.92&Aring;
<StructureSection load='1rb9' size='340' side='right'caption='[[1rb9]], [[Resolution|resolution]] 0.92&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> and <scene name='pdbligand=FOR:FORMYL GROUP'>FOR</scene>
<table><tr><td colspan='2'>[[1rb9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._Hildenborough Desulfovibrio vulgaris str. Hildenborough]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RB9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RB9 FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 0.92&#8491;</td></tr>
|GENE=  
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FME:N-FORMYLMETHIONINE'>FME</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
}}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rb9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rb9 OCA], [https://pdbe.org/1rb9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rb9 RCSB], [https://www.ebi.ac.uk/pdbsum/1rb9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rb9 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/RUBR_NITV2 RUBR_NITV2] Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.  Electron acceptor for cytoplasmic lactate dehydrogenase.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rb/1rb9_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rb9 ConSurf].
<div style="clear:both"></div>


'''RUBREDOXIN FROM DESULFOVIBRIO VULGARIS REFINED ANISOTROPICALLY AT 0.92 ANGSTROMS RESOLUTION'''
==See Also==
 
*[[Rubredoxin 3D structures|Rubredoxin 3D structures]]
 
*[[Rubredoxin PDB structures|Rubredoxin PDB structures]]
==About this Structure==
__TOC__
1RB9 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RB9 OCA].
</StructureSection>
[[Category: Desulfovibrio vulgaris]]
[[Category: Desulfovibrio vulgaris str. Hildenborough]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Butterworth, S.]]
[[Category: Butterworth S]]
[[Category: Dauter, Z.]]
[[Category: Dauter Z]]
[[Category: Sheldrick, G.]]
[[Category: Sheldrick G]]
[[Category: Sieker, L C.]]
[[Category: Sieker LC]]
[[Category: Wilson, K S.]]
[[Category: Wilson KS]]
[[Category: FE2]]
[[Category: FOR]]
[[Category: SO4]]
[[Category: anisotropic refinement]]
[[Category: atomic resolution]]
[[Category: iron-sulfur protein]]
[[Category: rubredoxin]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 13:49:18 2008''
Retrieved from "https://proteopedia.org/1rb9"