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==crystal structure of cathepsin a, complexed with 15a==
==crystal structure of cathepsin a, complexed with 15a==
<StructureSection load='4az3' size='340' side='right' caption='[[4az3]], [[Resolution|resolution]] 2.04&Aring;' scene=''>
<StructureSection load='4az3' size='340' side='right'caption='[[4az3]], [[Resolution|resolution]] 2.04&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4az3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AZ3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4AZ3 FirstGlance]. <br>
<table><tr><td colspan='2'>[[4az3]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AZ3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4AZ3 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=S35:(3S)-3-({[1-(2-FLUOROPHENYL)-5-{[(2R)-2-HYDROXY-3,3-DIMETHYLBUTYL]OXY}-1H-PYRAZOL-3-YL]CARBONYL}AMINO)-3-(2-METHYLPHENYL)PROPANOIC+ACID'>S35</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.04&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1ivy|1ivy]], [[4az0|4az0]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=S35:(3S)-3-({[1-(2-FLUOROPHENYL)-5-{[(2R)-2-HYDROXY-3,3-DIMETHYLBUTYL]OXY}-1H-PYRAZOL-3-YL]CARBONYL}AMINO)-3-(2-METHYLPHENYL)PROPANOIC+ACID'>S35</scene></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Carboxypeptidase_C Carboxypeptidase C], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.16.5 3.4.16.5] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4az3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4az3 OCA], [https://pdbe.org/4az3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4az3 RCSB], [https://www.ebi.ac.uk/pdbsum/4az3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4az3 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4az3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4az3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4az3 RCSB], [http://www.ebi.ac.uk/pdbsum/4az3 PDBsum]</span></td></tr>
</table>
</table>
== Disease ==
== Disease ==
[[http://www.uniprot.org/uniprot/PPGB_HUMAN PPGB_HUMAN]] Defects in CTSA are the cause of galactosialidosis (GSL) [MIM:[http://omim.org/entry/256540 256540]]. A lysosomal storage disease associated with a combined deficiency of beta-galactosidase and neuraminidase, secondary to a defect in cathepsin A. All patients have clinical manifestations typical of a lysosomal disorder, such as coarse facies, cherry red spots, vertebral changes, foam cells in the bone marrow, and vacuolated lymphocytes. Three phenotypic subtypes are recognized. The early infantile form is associated with fetal hydrops, edema, ascites, visceromegaly, skeletal dysplasia, and early death. The late infantile type is characterized by hepatosplenomegaly, growth retardation, cardiac involvement, and a normal or mildly affected mental state. The juvenile/adult form is characterized by myoclonus, ataxia, angiokeratoma, mental retardation, neurologic deterioration, absence of visceromegaly, and long survival.<ref>PMID:1756715</ref> <ref>PMID:8514852</ref> <ref>PMID:8968752</ref> <ref>PMID:10944848</ref>
[https://www.uniprot.org/uniprot/PPGB_HUMAN PPGB_HUMAN] Defects in CTSA are the cause of galactosialidosis (GSL) [MIM:[https://omim.org/entry/256540 256540]. A lysosomal storage disease associated with a combined deficiency of beta-galactosidase and neuraminidase, secondary to a defect in cathepsin A. All patients have clinical manifestations typical of a lysosomal disorder, such as coarse facies, cherry red spots, vertebral changes, foam cells in the bone marrow, and vacuolated lymphocytes. Three phenotypic subtypes are recognized. The early infantile form is associated with fetal hydrops, edema, ascites, visceromegaly, skeletal dysplasia, and early death. The late infantile type is characterized by hepatosplenomegaly, growth retardation, cardiac involvement, and a normal or mildly affected mental state. The juvenile/adult form is characterized by myoclonus, ataxia, angiokeratoma, mental retardation, neurologic deterioration, absence of visceromegaly, and long survival.<ref>PMID:1756715</ref> <ref>PMID:8514852</ref> <ref>PMID:8968752</ref> <ref>PMID:10944848</ref>  
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/PPGB_HUMAN PPGB_HUMAN]] Protective protein appears to be essential for both the activity of beta-galactosidase and neuraminidase, it associates with these enzymes and exerts a protective function necessary for their stability and activity. This protein is also a carboxypeptidase and can deamidate tachykinins.<ref>PMID:1907282</ref>
[https://www.uniprot.org/uniprot/PPGB_HUMAN PPGB_HUMAN] Protective protein appears to be essential for both the activity of beta-galactosidase and neuraminidase, it associates with these enzymes and exerts a protective function necessary for their stability and activity. This protein is also a carboxypeptidase and can deamidate tachykinins.<ref>PMID:1907282</ref>  
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
<div class="pdbe-citations 4az3" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Carboxypeptidase C]]
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Buning, C]]
[[Category: Large Structures]]
[[Category: Hiss, K]]
[[Category: Buning C]]
[[Category: Horstick, G]]
[[Category: Hiss K]]
[[Category: Huebschle, T]]
[[Category: Horstick G]]
[[Category: Kannt, A]]
[[Category: Huebschle T]]
[[Category: Kohlmann, M]]
[[Category: Kannt A]]
[[Category: Kroll, K]]
[[Category: Kohlmann M]]
[[Category: Linz, D]]
[[Category: Kroll K]]
[[Category: Linz, W]]
[[Category: Linz D]]
[[Category: Olpp, T]]
[[Category: Linz W]]
[[Category: Pernerstorfer, J]]
[[Category: Olpp T]]
[[Category: Ruetten, H]]
[[Category: Pernerstorfer J]]
[[Category: Ruf, S]]
[[Category: Ruetten H]]
[[Category: Sadowski, T]]
[[Category: Ruf S]]
[[Category: Schmidt, T]]
[[Category: Sadowski T]]
[[Category: Schreuder, H]]
[[Category: Schmidt T]]
[[Category: Wirth, K]]
[[Category: Schreuder H]]
[[Category: Carboxypeptidase]]
[[Category: Wirth K]]
[[Category: Cardiovascular]]
[[Category: Drug discovery]]
[[Category: Hydrolase]]

Latest revision as of 11:39, 20 December 2023

crystal structure of cathepsin a, complexed with 15a

4az3, resolution 2.04Å

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