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==Crystal structure of haloalkane dehalogenase LinB from Sphingobium sp. MI1205==
==Crystal structure of haloalkane dehalogenase LinB from Sphingobium sp. MI1205==
<StructureSection load='4h77' size='340' side='right' caption='[[4h77]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
<StructureSection load='4h77' size='340' side='right'caption='[[4h77]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4h77]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sphingobium_sp._mi1205 Sphingobium sp. mi1205]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H77 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4H77 FirstGlance]. <br>
<table><tr><td colspan='2'>[[4h77]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sphingobium_sp._MI1205 Sphingobium sp. MI1205]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H77 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4H77 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4h7d|4h7d]], [[4h7e|4h7e]], [[4h7f|4h7f]], [[4h7h|4h7h]], [[4h7i|4h7i]], [[4h7j|4h7j]], [[4h7k|4h7k]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">linB, dhaA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=407020 Sphingobium sp. MI1205])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4h77 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4h77 OCA], [https://pdbe.org/4h77 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4h77 RCSB], [https://www.ebi.ac.uk/pdbsum/4h77 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4h77 ProSAT]</span></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Haloalkane_dehalogenase Haloalkane dehalogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.8.1.5 3.8.1.5] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4h77 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4h77 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4h77 RCSB], [http://www.ebi.ac.uk/pdbsum/4h77 PDBsum]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/A4PEU6_9SPHN A4PEU6_9SPHN] Catalyzes hydrolytic cleavage of carbon-halogen bonds in halogenated aliphatic compounds, leading to the formation of the corresponding primary alcohols, halide ions and protons (By similarity).[HAMAP-Rule:MF_01231]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
<div class="pdbe-citations 4h77" style="background-color:#fffaf0;"></div>


==See Also==
==See Also==
*[[Dehalogenase|Dehalogenase]]
*[[Dehalogenase 3D structures|Dehalogenase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Haloalkane dehalogenase]]
[[Category: Large Structures]]
[[Category: Sphingobium sp. mi1205]]
[[Category: Sphingobium sp. MI1205]]
[[Category: Imai, F L]]
[[Category: Imai FL]]
[[Category: Mase, T]]
[[Category: Mase T]]
[[Category: Moriuchi, R]]
[[Category: Moriuchi R]]
[[Category: Nagata, K]]
[[Category: Nagata K]]
[[Category: Nagata, Y]]
[[Category: Nagata Y]]
[[Category: Ohtsuka, J]]
[[Category: Ohtsuka J]]
[[Category: Okai, M]]
[[Category: Okai M]]
[[Category: Tanokura, M]]
[[Category: Tanokura M]]
[[Category: Tsuda, M]]
[[Category: Tsuda M]]
[[Category: Alpha/beta hydrolase fold]]
[[Category: Hydrolase]]