3drg: Difference between revisions
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==Lactococcal OppA complexed with bradykinin in the closed conformation== | ==Lactococcal OppA complexed with bradykinin in the closed conformation== | ||
<StructureSection load='3drg' size='340' side='right' caption='[[3drg]], [[Resolution|resolution]] 2.50Å' scene=''> | <StructureSection load='3drg' size='340' side='right'caption='[[3drg]], [[Resolution|resolution]] 2.50Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[3drg]] is a 2 chain structure with sequence from [ | <table><tr><td colspan='2'>[[3drg]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactococcus_lactis_subsp._cremoris_MG1363 Lactococcus lactis subsp. cremoris MG1363]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DRG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DRG FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> | ||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr> | |||
<tr id=' | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3drg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3drg OCA], [https://pdbe.org/3drg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3drg RCSB], [https://www.ebi.ac.uk/pdbsum/3drg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3drg ProSAT]</span></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | |||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/A2RJ53_LACLM A2RJ53_LACLM] | |||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dr/3drg_consurf.spt"</scriptWhenChecked> | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dr/3drg_consurf.spt"</scriptWhenChecked> | ||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3drg ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
| Line 26: | Line 28: | ||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
<div class="pdbe-citations 3drg" style="background-color:#fffaf0;"></div> | |||
==See Also== | ==See Also== | ||
*[[ABC transporter 3D structures|ABC transporter 3D structures]] | |||
*[[Oligopeptide-binding protein|Oligopeptide-binding protein]] | *[[Oligopeptide-binding protein|Oligopeptide-binding protein]] | ||
== References == | == References == | ||
| Line 33: | Line 37: | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Lactococcus lactis subsp. cremoris MG1363]] | ||
[[Category: Berntsson | [[Category: Large Structures]] | ||
[[Category: Doeven | [[Category: Berntsson RP-A]] | ||
[[Category: Duurkens | [[Category: Doeven MK]] | ||
[[Category: Marrink | [[Category: Duurkens RH]] | ||
[[Category: Poolman | [[Category: Marrink S-J]] | ||
[[Category: Sengupta | [[Category: Poolman B]] | ||
[[Category: Slotboom | [[Category: Sengupta D]] | ||
[[Category: Thunnissen | [[Category: Slotboom D-J]] | ||
[[Category: Thunnissen A-M]] | |||
Latest revision as of 15:13, 1 November 2023
Lactococcal OppA complexed with bradykinin in the closed conformation
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