1ubp: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,332,843 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,332,843 edits
No edit summary
 
(16 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:1ubp.gif|left|200px]]


{{Structure
==CRYSTAL STRUCTURE OF UREASE FROM BACILLUS PASTEURII INHIBITED WITH BETA-MERCAPTOETHANOL AT 1.65 ANGSTROMS RESOLUTION==
|PDB= 1ubp |SIZE=350|CAPTION= <scene name='initialview01'>1ubp</scene>, resolution 1.65&Aring;
<StructureSection load='1ubp' size='340' side='right'caption='[[1ubp]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
|SITE= <scene name='pdbsite=BM2:A+Second+Molecule+Of+Beta-Mercaptoethanol+Is+Involved+In+...'>BM2</scene> and <scene name='pdbsite=CAT:The+Ureolytic+Dinuclear+Nickel2+Metallocenter+Is+Inhibit+...'>CAT</scene>
== Structural highlights ==
|LIGAND= <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene> and <scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>
<table><tr><td colspan='2'>[[1ubp]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Sporosarcina_pasteurii Sporosarcina pasteurii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UBP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UBP FirstGlance]. <br>
|ACTIVITY= [http://en.wikipedia.org/wiki/Urease Urease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.5 3.5.1.5]  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
|GENE=  
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=CXM:N-CARBOXYMETHIONINE'>CXM</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
}}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ubp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ubp OCA], [https://pdbe.org/1ubp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ubp RCSB], [https://www.ebi.ac.uk/pdbsum/1ubp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ubp ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/URE2_SPOPA URE2_SPOPA]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ub/1ubp_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ubp ConSurf].
<div style="clear:both"></div>


'''CRYSTAL STRUCTURE OF UREASE FROM BACILLUS PASTEURII INHIBITED WITH BETA-MERCAPTOETHANOL AT 1.65 ANGSTROMS RESOLUTION'''
==See Also==
 
*[[Urease 3D structures|Urease 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
1UBP is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Sporosarcina_pasteurii Sporosarcina pasteurii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UBP OCA].
[[Category: Large Structures]]
[[Category: Protein complex]]
[[Category: Sporosarcina pasteurii]]
[[Category: Sporosarcina pasteurii]]
[[Category: Urease]]
[[Category: Benini S]]
[[Category: Benini, S.]]
[[Category: Ciurli S]]
[[Category: Ciurli, S.]]
[[Category: Mangani S]]
[[Category: Mangani, S.]]
[[Category: Rypniewski WR]]
[[Category: Rypniewski, W R.]]
[[Category: Wilson KS]]
[[Category: Wilson, K S.]]
[[Category: BME]]
[[Category: NI]]
[[Category: bacillus pasteurii]]
[[Category: beta-mercaptoethanol]]
[[Category: hydrolase]]
[[Category: nickel]]
[[Category: urease]]
[[Category: x-ray]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:29:52 2008''
Retrieved from "https://proteopedia.org/1ubp"