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<div  style="background-color:yellow;" border="1" cellpadding="5">''Warning: this is a large structure, and loading might take a long time or not happen at all.''</div>
==Atomic-level structure of the entire HIV-1 capsid==
== Atomic-level structure of the entire HIV-1 capsid ==
<SX load='3j3q' size='340' side='right' viewer='molstar' caption='[[3j3q]]' scene=''>
<StructureSection load='3j3q-pdb-bundle1.pdb.gz' size='340' side='right' caption='[[3j3q]]' scene=''>
== Structural highlights ==
== Structural highlights ==
[[3j3q]] is a 1355 chain structure, available for rendering on Proteopedia in 25 parts.
<table><tr><td colspan='2'>[[3j3q]] is a 1356 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. This structure supersedes the now removed PDB entries [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vu4 1vu4], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vu5 1vu5], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vu6 1vu6], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vu7 1vu7], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vu8 1vu8], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vu9 1vu9], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vua 1vua], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vuc 1vuc], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vud 1vud], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vue 1vue], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vuf 1vuf], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vug 1vug], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vuh 1vuh], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vui 1vui], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vuj 1vuj], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vuk 1vuk], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vul 1vul], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vum 1vum], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vun 1vun], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vuo 1vuo], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vup 1vup], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vuq 1vuq], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vur 1vur], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vus 1vus] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vut 1vut]. The July 2013 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''HIV Capsid''  by David Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2013_7 10.2210/rcsb_pdb/mom_2013_7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3J3Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3J3Q FirstGlance]. <br>
You may render each one of these parts individually by selecting here: <jmol><jmolMenu>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy</td></tr>
<item>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3j3q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3j3q OCA], [https://pdbe.org/3j3q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3j3q RCSB], [https://www.ebi.ac.uk/pdbsum/3j3q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3j3q ProSAT]</span></td></tr>
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== Function ==
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[https://www.uniprot.org/uniprot/Q79791_9HIV1 Q79791_9HIV1] Capsid protein p24 forms the conical core of the virus that encapsulates the genomic RNA-nucleocapsid complex (By similarity).[SAAS:SAAS000071_004_008806]  Nucleocapsid protein p7 encapsulates and protects viral dimeric unspliced (genomic) RNA. Binds these RNAs through its zinc fingers (By similarity).[SAAS:SAAS000071_004_011858]
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<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 241: Line 17:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
<div class="pdbe-citations 3j3q" style="background-color:#fffaf0;"></div>


==See Also==
*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
== References ==
== References ==
<references/>
<references/>
</StructureSection>
__TOC__
[[Category: Zhao, G]]
</SX>
[[Category: Zhang, P]]
[[Category: HIV Capsid]]
[[Category: Schulten, K.J]]
[[Category: Human immunodeficiency virus 1]]
[[Category: Perilla, J.R]]
[[Category: Large Structures]]
[[Category: RCSB PDB Molecule of the Month]]
[[Category: Perilla JR]]
[[Category: Schulten KJ]]
[[Category: Zhang P]]
[[Category: Zhao G]]

Latest revision as of 14:14, 24 January 2024

Atomic-level structure of the entire HIV-1 capsid

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