1vrm: Difference between revisions

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[[Image:1vrm.gif|left|200px]]


{{Structure
==Crystal structure of the apbe protein (tm1553) from thermotoga maritima msb8 at 1.58 A resolution==
|PDB= 1vrm |SIZE=350|CAPTION= <scene name='initialview01'>1vrm</scene>, resolution 1.580&Aring;
<StructureSection load='1vrm' size='340' side='right'caption='[[1vrm]], [[Resolution|resolution]] 1.58&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=UNL:'>UNL</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene> and <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>
<table><tr><td colspan='2'>[[1vrm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima_MSB8 Thermotoga maritima MSB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VRM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VRM FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.58&#8491;</td></tr>
|GENE= TM1553 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243274 Thermotoga maritima MSB8])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
}}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vrm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vrm OCA], [https://pdbe.org/1vrm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vrm RCSB], [https://www.ebi.ac.uk/pdbsum/1vrm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vrm ProSAT], [https://www.topsan.org/Proteins/JCSG/1vrm TOPSAN]</span></td></tr>
 
</table>
'''Crystal structure of the ApbE protein (TM1553) from Thermotoga maritima at 1.58 A resolution'''
== Function ==
 
[https://www.uniprot.org/uniprot/Q9X1N9_THEMA Q9X1N9_THEMA]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
1VRM is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima_msb8 Thermotoga maritima msb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VRM OCA].  
Check<jmol>
 
  <jmolCheckbox>
==Reference==
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vr/1vrm_consurf.spt"</scriptWhenChecked>
Crystal structure of the ApbE protein (TM1553) from Thermotoga maritima at 1.58 A resolution., Han GW, Sri Krishna S, Schwarzenbacher R, McMullan D, Ginalski K, Elsliger MA, Brittain SM, Abdubek P, Agarwalla S, Ambing E, Astakhova T, Axelrod H, Canaves JM, Chiu HJ, DiDonato M, Grzechnik SK, Hale J, Hampton E, Haugen J, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Koesema E, Kreusch A, Kuhn P, Miller MD, Morse AT, Moy K, Nigoghossian E, Oommachen S, Ouyang J, Paulsen J, Quijano K, Reyes R, Rife C, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Wang X, West B, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA, Proteins. 2006 Sep 1;64(4):1083-90. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16779835 16779835]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Single protein]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Thermotoga maritima msb8]]
  </jmolCheckbox>
[[Category: JCSG, Joint Center for Structural Genomics.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vrm ConSurf].
[[Category: MPD]]
<div style="clear:both"></div>
[[Category: MRD]]
__TOC__
[[Category: UNL]]
</StructureSection>
[[Category: hypothetical protein]]
[[Category: Large Structures]]
[[Category: jcsg]]
[[Category: Thermotoga maritima MSB8]]
[[Category: joint center for structural genomic]]
[[Category: protein structure initiative]]
[[Category: psi]]
[[Category: structural genomic]]
[[Category: tm1553]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:48:48 2008''
Retrieved from "https://proteopedia.org/1vrm"