1ws0: Difference between revisions

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[[Image:1ws0.gif|left|200px]]


{{Structure
==Structure analysis of peptide deformylase from Bacillus cereus==
|PDB= 1ws0 |SIZE=350|CAPTION= <scene name='initialview01'>1ws0</scene>, resolution 1.70&Aring;
<StructureSection load='1ws0' size='340' side='right'caption='[[1ws0]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=NI:NICKEL (II) ION'>NI</scene>
<table><tr><td colspan='2'>[[1ws0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_cereus Bacillus cereus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WS0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WS0 FirstGlance]. <br>
|ACTIVITY= [http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88]  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
|GENE= DEF1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1396 Bacillus cereus])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
}}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ws0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ws0 OCA], [https://pdbe.org/1ws0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ws0 RCSB], [https://www.ebi.ac.uk/pdbsum/1ws0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ws0 ProSAT]</span></td></tr>
 
</table>
'''Structure analysis of peptide deformylase from Bacillus cereus'''
== Function ==
 
[https://www.uniprot.org/uniprot/DEF1_BACCR DEF1_BACCR] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (By similarity).
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
1WS0 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_cereus Bacillus cereus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WS0 OCA].  
Check<jmol>
 
  <jmolCheckbox>
==Reference==
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ws/1ws0_consurf.spt"</scriptWhenChecked>
Structure analysis of peptide deformylase from Bacillus cereus., Moon JH, Park JK, Kim EE, Proteins. 2005 Oct 1;61(1):217-20. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16049914 16049914]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ws0 ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Bacillus cereus]]
[[Category: Bacillus cereus]]
[[Category: Peptide deformylase]]
[[Category: Large Structures]]
[[Category: Single protein]]
[[Category: Kim EE]]
[[Category: Kim, E E.]]
[[Category: Moon JH]]
[[Category: Moon, J H.]]
[[Category: Park JK]]
[[Category: Park, J K.]]
[[Category: NI]]
[[Category: alpha + beta topology]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 15:00:50 2008''
Retrieved from "https://proteopedia.org/1ws0"