2ywc: Difference between revisions
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==Crystal structure of GMP synthetase from Thermus thermophilus in complex with XMP== | ==Crystal structure of GMP synthetase from Thermus thermophilus in complex with XMP== | ||
<StructureSection load='2ywc' size='340' side='right' caption='[[2ywc]], [[Resolution|resolution]] 2.20Å' scene=''> | <StructureSection load='2ywc' size='340' side='right'caption='[[2ywc]], [[Resolution|resolution]] 2.20Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2ywc]] is a 4 chain structure with sequence from [ | <table><tr><td colspan='2'>[[2ywc]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YWC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YWC FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2Å</td></tr> | ||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=XMP:XANTHOSINE-5-MONOPHOSPHATE'>XMP</scene></td></tr> | |||
<tr id=' | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ywc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ywc OCA], [https://pdbe.org/2ywc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ywc RCSB], [https://www.ebi.ac.uk/pdbsum/2ywc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ywc ProSAT], [https://www.topsan.org/Proteins/RSGI/2ywc TOPSAN]</span></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | |||
</table> | </table> | ||
== Function == | == Function == | ||
[ | [https://www.uniprot.org/uniprot/GUAA_THET8 GUAA_THET8] Catalyzes the synthesis of GMP from XMP (By similarity). | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yw/2ywc_consurf.spt"</scriptWhenChecked> | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yw/2ywc_consurf.spt"</scriptWhenChecked> | ||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/ | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ywc ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Thermus thermophilus]] | [[Category: Large Structures]] | ||
[[Category: Baba | [[Category: Thermus thermophilus HB8]] | ||
[[Category: Kanagawa | [[Category: Baba S]] | ||
[[Category: Kawai | [[Category: Kanagawa M]] | ||
[[Category: Kuramitsu | [[Category: Kawai G]] | ||
[[Category: Kuramitsu S]] | |||
[[Category: Sampei | [[Category: Sampei G]] | ||
[[Category: Yokoyama | [[Category: Yokoyama S]] | ||
Latest revision as of 08:07, 23 October 2024
Crystal structure of GMP synthetase from Thermus thermophilus in complex with XMP
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