1ybm: Difference between revisions

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[[Image:1ybm.gif|left|200px]]


{{Structure
==X-ray structure of selenomethionyl gene product from Arabidopsis thaliana at5g02240 in space group P21212==
|PDB= 1ybm |SIZE=350|CAPTION= <scene name='initialview01'>1ybm</scene>, resolution 2.096&Aring;
<StructureSection load='1ybm' size='340' side='right'caption='[[1ybm]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
|SITE= <scene name='pdbsite=AC1:Nap+Binding+Site+For+Residue+A+400'>AC1</scene> and <scene name='pdbsite=AC2:Nap+Binding+Site+For+Residue+B+401'>AC2</scene>
== Structural highlights ==
|LIGAND= <scene name='pdbligand=NAP:NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE'>NAP</scene>
<table><tr><td colspan='2'>[[1ybm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YBM FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.096&#8491;</td></tr>
|GENE= At5g02240 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
}}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ybm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ybm OCA], [https://pdbe.org/1ybm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ybm RCSB], [https://www.ebi.ac.uk/pdbsum/1ybm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ybm ProSAT]</span></td></tr>
 
</table>
'''X-ray structure of selenomethionyl gene product from Arabidopsis thaliana at5g02240 in space group P21212'''
== Function ==
 
[https://www.uniprot.org/uniprot/Y5224_ARATH Y5224_ARATH]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
1YBM is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBM OCA].  
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yb/1ybm_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ybm ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Arabidopsis thaliana]]
[[Category: Arabidopsis thaliana]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Allard, S T.M.]]
[[Category: Allard STM]]
[[Category: Bingman, C A.]]
[[Category: Bingman CA]]
[[Category: Bitto, E.]]
[[Category: Bitto E]]
[[Category: CESG, Center for Eukaryotic Structural Genomics.]]
[[Category: Phillips Jr GN]]
[[Category: Jr., G N.Phillips.]]
[[Category: Smith DW]]
[[Category: Smith, D W.]]
[[Category: Wesenberg GE]]
[[Category: Wesenberg, G E.]]
[[Category: NAP]]
[[Category: center for eukaryotic structural genomic]]
[[Category: cesg]]
[[Category: nadp]]
[[Category: protein structure initiative]]
[[Category: psi]]
[[Category: structural genomic]]
[[Category: unknown function]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 15:20:52 2008''

Latest revision as of 08:56, 14 February 2024

X-ray structure of selenomethionyl gene product from Arabidopsis thaliana at5g02240 in space group P21212

1ybm, resolution 2.10Å

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