2yyu: Difference between revisions
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==Crystal structure of uncharacterized conserved protein from Geobacillus kaustophilus== | ==Crystal structure of uncharacterized conserved protein from Geobacillus kaustophilus== | ||
<StructureSection load='2yyu' size='340' side='right' caption='[[2yyu]], [[Resolution|resolution]] 2.20Å' scene=''> | <StructureSection load='2yyu' size='340' side='right'caption='[[2yyu]], [[Resolution|resolution]] 2.20Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2yyu]] is a 2 chain structure with sequence from [ | <table><tr><td colspan='2'>[[2yyu]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacillus_kaustophilus_HTA426 Geobacillus kaustophilus HTA426]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YYU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YYU FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2Å</td></tr> | ||
<tr id=' | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=C5P:CYTIDINE-5-MONOPHOSPHATE'>C5P</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yyu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yyu OCA], [https://pdbe.org/2yyu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yyu RCSB], [https://www.ebi.ac.uk/pdbsum/2yyu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yyu ProSAT], [https://www.topsan.org/Proteins/RSGI/2yyu TOPSAN]</span></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | |||
</table> | </table> | ||
== Function == | == Function == | ||
[ | [https://www.uniprot.org/uniprot/PYRF_GEOKA PYRF_GEOKA] Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP) (By similarity). | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yy/2yyu_consurf.spt"</scriptWhenChecked> | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yy/2yyu_consurf.spt"</scriptWhenChecked> | ||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yyu ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
==See Also== | |||
*[[Uridine 5'-monophosphate synthase 3D structures|Uridine 5'-monophosphate synthase 3D structures]] | |||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Geobacillus kaustophilus]] | [[Category: Geobacillus kaustophilus HTA426]] | ||
[[Category: | [[Category: Large Structures]] | ||
[[Category: Baba | [[Category: Baba S]] | ||
[[Category: Bessho | [[Category: Bessho Y]] | ||
[[Category: Kanagawa | [[Category: Kanagawa M]] | ||
[[Category: Kawai | [[Category: Kawai G]] | ||
[[Category: Kuramitsu | [[Category: Kuramitsu S]] | ||
[[Category: Nakamura | [[Category: Nakamura Y]] | ||
[[Category: Sampei G]] | |||
[[Category: Sampei | [[Category: Yokoyama S]] | ||
[[Category: Yokoyama | |||
