2otn: Difference between revisions
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==Crystal structure of the catalytically active form of diaminopimelate epimerase from Bacillus anthracis== | ==Crystal structure of the catalytically active form of diaminopimelate epimerase from Bacillus anthracis== | ||
<StructureSection load='2otn' size='340' side='right' caption='[[2otn]], [[Resolution|resolution]] 2.40Å' scene=''> | <StructureSection load='2otn' size='340' side='right'caption='[[2otn]], [[Resolution|resolution]] 2.40Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2otn]] is a 2 chain structure with sequence from [ | <table><tr><td colspan='2'>[[2otn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_anthracis_str._Ames Bacillus anthracis str. Ames]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OTN FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4Å</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2otn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otn OCA], [https://pdbe.org/2otn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2otn RCSB], [https://www.ebi.ac.uk/pdbsum/2otn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2otn ProSAT]</span></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | |||
</table> | </table> | ||
== Function == | == Function == | ||
[ | [https://www.uniprot.org/uniprot/DAPF_BACAN DAPF_BACAN] Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (By similarity).[HAMAP-Rule:MF_00197] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ot/2otn_consurf.spt"</scriptWhenChecked> | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ot/2otn_consurf.spt"</scriptWhenChecked> | ||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2otn ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Bacillus anthracis str. | [[Category: Bacillus anthracis str. Ames]] | ||
[[Category: | [[Category: Large Structures]] | ||
[[Category: Fukuda | [[Category: Fukuda K]] | ||
[[Category: Jaroszewski | [[Category: Jaroszewski L]] | ||
[[Category: Liddington | [[Category: Liddington RC]] | ||
[[Category: Matho | [[Category: Matho MH]] | ||
[[Category: Roper | [[Category: Roper D]] | ||
[[Category: Santelli | [[Category: Santelli E]] | ||
Latest revision as of 10:48, 30 August 2023
Crystal structure of the catalytically active form of diaminopimelate epimerase from Bacillus anthracis
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