2d5m: Difference between revisions
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==Flavoredoxin of Desulfovibrio vulgaris (Miyazaki F)== | |||
<StructureSection load='2d5m' size='340' side='right'caption='[[2d5m]], [[Resolution|resolution]] 1.05Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[2d5m]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._'Miyazaki_F' Desulfovibrio vulgaris str. 'Miyazaki F']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D5M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D5M FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.05Å</td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d5m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d5m OCA], [https://pdbe.org/2d5m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d5m RCSB], [https://www.ebi.ac.uk/pdbsum/2d5m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d5m ProSAT]</span></td></tr> | |||
</table> | |||
'' | == Function == | ||
[https://www.uniprot.org/uniprot/Q4W5X6_DESVU Q4W5X6_DESVU] | |||
== Evolutionary Conservation == | |||
== | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | |||
[[ | <jmolCheckbox> | ||
[ | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d5/2d5m_consurf.spt"</scriptWhenChecked> | ||
[[ | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
[ | <text>to colour the structure by Evolutionary Conservation</text> | ||
[ | </jmolCheckbox> | ||
[[Category: | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d5m ConSurf]. | ||
[[Category: | <div style="clear:both"></div> | ||
[[Category: | __TOC__ | ||
[[Category: | </StructureSection> | ||
[[Category: | [[Category: Desulfovibrio vulgaris str. 'Miyazaki F']] | ||
[[Category: Large Structures]] | |||
[[Category: Higuchi Y]] | |||
[[Category: Shibata N]] | |||
[[Category: Ueda Y]] | |||
Latest revision as of 13:46, 13 March 2024
Flavoredoxin of Desulfovibrio vulgaris (Miyazaki F)
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