2ei3: Difference between revisions

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[[Image:2ei3.jpg|left|200px]]


{{Structure
==Anaerobic Crystal Structure Analysis of the 1,2-dihydroxynaphthalene dioxygenase from Pseudomonas sp. strain C18 complexes with 2,3-dihydroxybiphenyl==
|PDB= 2ei3 |SIZE=350|CAPTION= <scene name='initialview01'>2ei3</scene>, resolution 1.90&Aring;
<StructureSection load='2ei3' size='340' side='right'caption='[[2ei3]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
|SITE= <scene name='pdbsite=AC1:Mg+Binding+Site+For+Residue+A+398'>AC1</scene>, <scene name='pdbsite=AC2:Fe2+Binding+Site+For+Residue+A+399'>AC2</scene>, <scene name='pdbsite=AC3:Bpy+Binding+Site+For+Residue+A+350'>AC3</scene>, <scene name='pdbsite=AC4:Bpy+Binding+Site+For+Residue+A+351'>AC4</scene>, <scene name='pdbsite=AC5:Bpy+Binding+Site+For+Residue+A+352'>AC5</scene>, <scene name='pdbsite=AC6:Gol+Binding+Site+For+Residue+A+901'>AC6</scene> and <scene name='pdbsite=AC7:Gol+Binding+Site+For+Residue+A+902'>AC7</scene>
== Structural highlights ==
|LIGAND= <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=BPY:BIPHENYL-2,3-DIOL'>BPY</scene> and <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>
<table><tr><td colspan='2'>[[2ei3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_sp._C18 Pseudomonas sp. C18]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EI3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EI3 FirstGlance]. <br>
|ACTIVITY=
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
|GENE= doxg ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=306 Pseudomonas sp.])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BPY:BIPHENYL-2,3-DIOL'>BPY</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
}}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ei3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ei3 OCA], [https://pdbe.org/2ei3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ei3 RCSB], [https://www.ebi.ac.uk/pdbsum/2ei3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ei3 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/NAHC_PSEU8 NAHC_PSEU8] Involved in the naphthalene catabolic pathway. Catalyzes the meta-cleavage of 1,2-dihydroxynaphthalene (1,2-DHN) to yield 2-hydroxychromene-2-carboxylic acid (By similarity).
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ei/2ei3_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ei3 ConSurf].
<div style="clear:both"></div>


'''Anaerobic Crystal Structure Analysis of the 1,2-dihydroxynaphthalene dioxygenase from Pseudomonas sp. strain C18 complexes with 2,3-dihydroxybiphenyl'''
==See Also==
 
*[[Dioxygenase 3D structures|Dioxygenase 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
2EI3 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp. Pseudomonas sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EI3 OCA].
[[Category: Large Structures]]
[[Category: Pseudomonas sp.]]
[[Category: Pseudomonas sp. C18]]
[[Category: Single protein]]
[[Category: Bolin JT]]
[[Category: Bolin, J T.]]
[[Category: Colbert CL]]
[[Category: Colbert, C L.]]
[[Category: Kelker MS]]
[[Category: Kelker, M S.]]
[[Category: Neau DB]]
[[Category: Neau, D B.]]
[[Category: BPY]]
[[Category: FE2]]
[[Category: GOL]]
[[Category: MG]]
[[Category: extradiol dioxygenase]]
[[Category: oxidoreductase]]
[[Category: protein substrate complex]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 16:40:24 2008''

Latest revision as of 08:40, 25 October 2023

Anaerobic Crystal Structure Analysis of the 1,2-dihydroxynaphthalene dioxygenase from Pseudomonas sp. strain C18 complexes with 2,3-dihydroxybiphenyl

2ei3, resolution 1.90Å

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