2f2g: Difference between revisions

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[[Image:2f2g.gif|left|200px]]


{{Structure
==X-Ray Structure of Gene Product From Arabidopsis Thaliana AT3G16990==
|PDB= 2f2g |SIZE=350|CAPTION= <scene name='initialview01'>2f2g</scene>, resolution 2.10&Aring;
<StructureSection load='2f2g' size='340' side='right'caption='[[2f2g]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
|SITE= <scene name='pdbsite=AC1:So4+Binding+Site+For+Residue+B+1401'>AC1</scene>, <scene name='pdbsite=AC2:So4+Binding+Site+For+Residue+B+1402'>AC2</scene>, <scene name='pdbsite=AC3:So4+Binding+Site+For+Residue+A+1403'>AC3</scene>, <scene name='pdbsite=AC4:So4+Binding+Site+For+Residue+B+1404'>AC4</scene>, <scene name='pdbsite=AC5:Hmh+Binding+Site+For+Residue+A+1300'>AC5</scene> and <scene name='pdbsite=AC6:Hmh+Binding+Site+For+Residue+B+1301'>AC6</scene>
== Structural highlights ==
|LIGAND= <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> and <scene name='pdbligand=HMH:4-AMINO-5-HYDROXYMETHYL-2-METHYLPYRIMIDINE'>HMH</scene>
<table><tr><td colspan='2'>[[2f2g]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arath Arath]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1q4m 1q4m]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F2G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2F2G FirstGlance]. <br>
|ACTIVITY=
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HMH:4-AMINO-5-HYDROXYMETHYL-2-METHYLPYRIMIDINE'>HMH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
|GENE= At3g16990 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
}}
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">At3g16990 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
 
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2f2g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f2g OCA], [https://pdbe.org/2f2g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2f2g RCSB], [https://www.ebi.ac.uk/pdbsum/2f2g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2f2g ProSAT], [https://www.topsan.org/Proteins/CESG/2f2g TOPSAN]</span></td></tr>
'''X-Ray Structure of Gene Product From Arabidopsis Thaliana AT3G16990'''
</table>
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
==About this Structure==
Check<jmol>
2F2G is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. This structure supersedes the now removed PDB entry 1Q4M. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F2G OCA].  
  <jmolCheckbox>
 
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f2/2f2g_consurf.spt"</scriptWhenChecked>
==Reference==
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
Crystal structure of gene locus At3g16990 from Arabidopsis thaliana., Blommel PG, Smith DW, Bingman CA, Dyer DH, Rayment I, Holden HM, Fox BG, Phillips GN Jr, Proteins. 2004 Oct 1;57(1):221-2. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15326608 15326608]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Arabidopsis thaliana]]
  </jmolCheckbox>
[[Category: Single protein]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2f2g ConSurf].
[[Category: Bingman, C A.]]
<div style="clear:both"></div>
[[Category: Bitto, E.]]
__TOC__
[[Category: CESG, Center for Eukaryotic Structural Genomics.]]
</StructureSection>
[[Category: Johnson, K A.]]
[[Category: Arath]]
[[Category: Jr., G N.Phillips.]]
[[Category: Large Structures]]
[[Category: Smith, D W.]]
[[Category: Bingman, C A]]
[[Category: Wesenberg, G W.]]
[[Category: Bitto, E]]
[[Category: HMH]]
[[Category: Structural genomic]]
[[Category: SO4]]
[[Category: Johnson, K A]]
[[Category: at3g16990]]
[[Category: Phillips, G N]]
[[Category: center for eukaryotic structural genomic]]
[[Category: Smith, D W]]
[[Category: center foreukaryotic structural genomic]]
[[Category: Wesenberg, G W]]
[[Category: cesg]]
[[Category: At3g16990]]
[[Category: plant protein]]
[[Category: Cesg]]
[[Category: protein structure initiative]]
[[Category: Plant protein]]
[[Category: psi]]
[[Category: PSI, Protein structure initiative]]
[[Category: structural genomic]]
[[Category: Tena/thi-4/pqqc family]]
[[Category: tena/thi-4/pqqc family]]
[[Category: Tena_thi-4 domain]]
[[Category: tena_thi-4 domain]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 16:47:16 2008''

Latest revision as of 10:37, 17 February 2021

X-Ray Structure of Gene Product From Arabidopsis Thaliana AT3G16990

2f2g, resolution 2.10Å

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