3w06: Difference between revisions

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==Crystal structure of Arabidopsis thaliana DWARF14 Like (AtD14L)==
==Crystal structure of Arabidopsis thaliana DWARF14 Like (AtD14L)==
<StructureSection load='3w06' size='340' side='right' caption='[[3w06]], [[Resolution|resolution]] 1.15&Aring;' scene=''>
<StructureSection load='3w06' size='340' side='right'caption='[[3w06]], [[Resolution|resolution]] 1.15&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3w06]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W06 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3W06 FirstGlance]. <br>
<table><tr><td colspan='2'>[[3w06]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W06 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3W06 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.15&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3w04|3w04]], [[3w05|3w05]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AT4g37470, F6G17.120 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3w06 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w06 OCA], [https://pdbe.org/3w06 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3w06 RCSB], [https://www.ebi.ac.uk/pdbsum/3w06 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3w06 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3w06 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w06 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3w06 RCSB], [http://www.ebi.ac.uk/pdbsum/3w06 PDBsum]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/Q9SZU7_ARATH Q9SZU7_ARATH]] Involved in seed germination and seedling development. Essential for plant responses to karrikins, a class of butenolide compounds, structurally similar to strigolactones, released from burning vegetation that stimulate seed germination and enhance seedling photomorphogenesis. KAI2 is not required for strigolactone-mediated responses, but MAX2 is necessary for responses to karrikins and strigolactones.<ref>PMID:20864454</ref> <ref>PMID:22357928</ref> <ref>PMID:23142794</ref> <ref>PMID:23301669</ref>
[https://www.uniprot.org/uniprot/KAI2_ARATH KAI2_ARATH] Involved in seed germination and seedling development. Essential for plant responses to karrikins, a class of butenolide compounds, structurally similar to strigolactones, released from burning vegetation that stimulate seed germination and enhance seedling photomorphogenesis. KAI2 is not required for strigolactone-mediated responses, but MAX2 is necessary for responses to karrikins and strigolactones.<ref>PMID:20864454</ref> <ref>PMID:22357928</ref> <ref>PMID:23142794</ref> <ref>PMID:23301669</ref>  
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
<div class="pdbe-citations 3w06" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
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</StructureSection>
</StructureSection>
[[Category: Arabidopsis thaliana]]
[[Category: Arabidopsis thaliana]]
[[Category: Hakoshima, T]]
[[Category: Large Structures]]
[[Category: Hirano, Y]]
[[Category: Hakoshima T]]
[[Category: Kagiyama, M]]
[[Category: Hirano Y]]
[[Category: Kim, S Y]]
[[Category: Kagiyama M]]
[[Category: Kyozuka, J]]
[[Category: Kim SY]]
[[Category: Mori, T]]
[[Category: Kyozuka J]]
[[Category: Seto, Y]]
[[Category: Mori T]]
[[Category: Yamaguchi, S]]
[[Category: Seto Y]]
[[Category: Alpha/beta hydrolase]]
[[Category: Yamaguchi S]]
[[Category: Hydrolase]]
[[Category: Karrikin binding]]
[[Category: Karrikin signaling]]
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