4kyr: Difference between revisions

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==Structure of a product bound plant phosphatase==
==Structure of a product bound plant phosphatase==
<StructureSection load='4kyr' size='340' side='right' caption='[[4kyr]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
<StructureSection load='4kyr' size='340' side='right'caption='[[4kyr]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4kyr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KYR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4KYR FirstGlance]. <br>
<table><tr><td colspan='2'>[[4kyr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KYR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4KYR FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4kyq|4kyq]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=PRD_900030:alpha-maltopentaose'>PRD_900030</scene>, <scene name='pdbligand=PRD_900035:alpha-maltohexaose'>PRD_900035</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">At3g10940, AT3G10940.1, F9F8.24, LSF2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4kyr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4kyr OCA], [https://pdbe.org/4kyr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4kyr RCSB], [https://www.ebi.ac.uk/pdbsum/4kyr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4kyr ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4kyr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4kyr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4kyr RCSB], [http://www.ebi.ac.uk/pdbsum/4kyr PDBsum]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
== Function ==
== Publication Abstract from PubMed ==
[https://www.uniprot.org/uniprot/LSF2_ARATH LSF2_ARATH] Starch-associated phosphoglucan phosphatase that can release phosphate from the C3 glucan position. Probably participates in the regulation of starch degradation.<ref>PMID:22100529</ref>  
Starch is a water-insoluble, Glc-based biopolymer that is used for energy storage and is synthesized and degraded in a diurnal manner in plant leaves. Reversible phosphorylation is the only known natural starch modification and is required for starch degradation in planta. Critical to starch energy release is the activity of glucan phosphatases; however, the structural basis of dephosphorylation by glucan phosphatases is unknown. Here, we describe the structure of the Arabidopsis thaliana starch glucan phosphatase LIKE SEX FOUR2 (LSF2) both with and without phospho-glucan product bound at 2.3A and 1.65A, respectively. LSF2 binds maltohexaose-phosphate using an aromatic channel within an extended phosphatase active site and positions maltohexaose in a C3-specific orientation, which we show is critical for the specific glucan phosphatase activity of LSF2 toward native Arabidopsis starch. However, unlike other starch binding enzymes, LSF2 does not possess a carbohydrate binding module domain. Instead we identify two additional glucan binding sites located within the core LSF2 phosphatase domain. This structure is the first of a glucan-bound glucan phosphatase and provides new insights into the molecular basis of this agriculturally and industrially relevant enzyme family as well as the unique mechanism of LSF2 catalysis, substrate specificity, and interaction with starch granules.
 
Structure of the Arabidopsis Glucan Phosphatase LIKE SEX FOUR2 Reveals a Unique Mechanism for Starch Dephosphorylation.,Meekins DA, Guo HF, Husodo S, Paasch BC, Bridges TM, Santelia D, Kotting O, Vander Kooi CW, Gentry MS Plant Cell. 2013 Jul 5. PMID:23832589<ref>PMID:23832589</ref>
 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
== References ==
== References ==
<references/>
<references/>
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</StructureSection>
</StructureSection>
[[Category: Arabidopsis thaliana]]
[[Category: Arabidopsis thaliana]]
[[Category: Bridges, T M]]
[[Category: Large Structures]]
[[Category: Gentry, M S]]
[[Category: Bridges TM]]
[[Category: Guo, H F]]
[[Category: Gentry MS]]
[[Category: Husodo, S]]
[[Category: Guo H-F]]
[[Category: Kooi, C W.Vander]]
[[Category: Husodo S]]
[[Category: Kotting, O]]
[[Category: Kotting O]]
[[Category: Meekins, D A]]
[[Category: Meekins DA]]
[[Category: Paasch, B C]]
[[Category: Paasch BC]]
[[Category: Santelia, D]]
[[Category: Santelia D]]
[[Category: Carbohydrate/sugar binding]]
[[Category: Vander Kooi CW]]
[[Category: Chloroplast]]
[[Category: Hydrolase]]
[[Category: Sugar binding protein]]

Latest revision as of 12:16, 1 March 2024

Structure of a product bound plant phosphatase

4kyr, resolution 2.30Å

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