2hz5: Difference between revisions

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[[Image:2hz5.jpg|left|200px]]


{{Structure
==Crystal structure of human dynein light chain Dnlc2A==
|PDB= 2hz5 |SIZE=350|CAPTION= <scene name='initialview01'>2hz5</scene>, resolution 2.10&Aring;
<StructureSection load='2hz5' size='340' side='right'caption='[[2hz5]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=CS:CESIUM ION'>CS</scene>
<table><tr><td colspan='2'>[[2hz5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HZ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HZ5 FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
|GENE= DNLC2A ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CS:CESIUM+ION'>CS</scene></td></tr>
}}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hz5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hz5 OCA], [https://pdbe.org/2hz5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hz5 RCSB], [https://www.ebi.ac.uk/pdbsum/2hz5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hz5 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/DLRB1_HUMAN DLRB1_HUMAN] Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hz/2hz5_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2hz5 ConSurf].
<div style="clear:both"></div>


'''Crystal structure of human dynein light chain Dnlc2A'''
==See Also==
 
*[[Dynein 3D structures|Dynein 3D structures]]
 
__TOC__
==Overview==
</StructureSection>
The human light chain of the motor protein dynein, Dnlc2A, is also a novel TGF-beta-signaling component, which is altered with high frequency in epithelial ovarian cancer. It is an important mediator of dynein and the development of cancer, owing to its ability to bind to the dynein intermediate light chain (DIC) IC74 and to regulate TGF-beta-dependent transcriptional events. Here we report the 2.1-A crystal structure of Dnlc2A using single anomalous diffraction. The proteins form a homodimer in solution and interact mainly through the helix alpha(2), strand beta(3), and the loop following this strand in each protein to generate a 10-stranded beta-sheet core. The surface of the beta-sheet core is mainly positively charged and predicted (by software PPI-Pred) to be the site that interacts with other partners. At the same time, the residues 79-82, 88, and 90 of each molecule formed two holes in the core. Residue 89 of each molecule, which is crucial for the DIC binding function of Dnlc2A, is within the holes. On the basis of these observations, we propose that the homodimer is the structural and functional unit maintained by hydrogen bonding interactions and hydrophobic packing, and that the patch of the surface of the beta-sheet core is the main area of interaction with other partners. Furthermore, the two holes would be the key sites to interact with IC74.
 
==About this Structure==
2HZ5 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HZ5 OCA].
 
==Reference==
Crystal structure of human dynein light chain Dnlc2A: structural insights into the interaction with IC74., Liu JF, Wang ZX, Wang XQ, Tang Q, An XM, Gui LL, Liang DC, Biochem Biophys Res Commun. 2006 Oct 27;349(3):1125-9. Epub 2006 Sep 5. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16970917 16970917]
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: An, X M.]]
[[Category: An X-M]]
[[Category: Gui, L L.]]
[[Category: Gui L-L]]
[[Category: Liang, D C.]]
[[Category: Liang D-C]]
[[Category: Liu, J F.]]
[[Category: Liu J-F]]
[[Category: Tang, Q.]]
[[Category: Tang Q]]
[[Category: Wang, X Q.]]
[[Category: Wang X-Q]]
[[Category: Wang, Z X.]]
[[Category: Wang Z-X]]
[[Category: CS]]
[[Category: dnlc2a]]
[[Category: transport protein]]
 
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Retrieved from "https://proteopedia.org/2hz5"