2i6d: Difference between revisions

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[[Image:2i6d.gif|left|200px]]


{{Structure
==The structure of a putative RNA methyltransferase of the TrmH family from Porphyromonas gingivalis.==
|PDB= 2i6d |SIZE=350|CAPTION= <scene name='initialview01'>2i6d</scene>, resolution 1.85&Aring;
<StructureSection load='2i6d' size='340' side='right'caption='[[2i6d]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=ACY:ACETIC ACID'>ACY</scene>
<table><tr><td colspan='2'>[[2i6d]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Porgi Porgi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I6D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2I6D FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene></td></tr>
|GENE= SpoU, PG_0744 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=837 Porphyromonas gingivalis])
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
}}
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SpoU, PG_0744 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242619 PORGI])</td></tr>
 
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2i6d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i6d OCA], [https://pdbe.org/2i6d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2i6d RCSB], [https://www.ebi.ac.uk/pdbsum/2i6d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2i6d ProSAT], [https://www.topsan.org/Proteins/MCSG/2i6d TOPSAN]</span></td></tr>
'''The structure of a putative RNA methyltransferase of the TrmH family from Porphyromonas gingivalis.'''
</table>
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
==About this Structure==
Check<jmol>
2I6D is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Porphyromonas_gingivalis Porphyromonas gingivalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I6D OCA].  
  <jmolCheckbox>
[[Category: Porphyromonas gingivalis]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i6/2i6d_consurf.spt"</scriptWhenChecked>
[[Category: Single protein]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Cuff, M E.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Joachimiak, A.]]
  </jmolCheckbox>
[[Category: Li, H.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2i6d ConSurf].
[[Category: MCSG, Midwest Center for Structural Genomics.]]
<div style="clear:both"></div>
[[Category: Moy, S.]]
__TOC__
[[Category: Mussar, K E.]]
</StructureSection>
[[Category: ACY]]
[[Category: Large Structures]]
[[Category: knot]]
[[Category: Porgi]]
[[Category: mcsg]]
[[Category: Cuff, M E]]
[[Category: midwest center for structural genomic]]
[[Category: Joachimiak, A]]
[[Category: porphyromonas gingivali]]
[[Category: Li, H]]
[[Category: protein structure initiative]]
[[Category: Structural genomic]]
[[Category: psi-2]]
[[Category: Moy, S]]
[[Category: rna methyltransferase]]
[[Category: Mussar, K E]]
[[Category: structural genomic]]
[[Category: Knot]]
[[Category: stuctural genomic]]
[[Category: Mcsg]]
[[Category: trmh family]]
[[Category: Porphyromonas gingivali]]
 
[[Category: PSI, Protein structure initiative]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 17:25:58 2008''
[[Category: Rna methyltransferase]]
[[Category: Stuctural genomic]]
[[Category: Transferase]]
[[Category: Trmh family]]

Latest revision as of 07:29, 24 March 2021

The structure of a putative RNA methyltransferase of the TrmH family from Porphyromonas gingivalis.

2i6d, resolution 1.85Å

Drag the structure with the mouse to rotate

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