2irp: Difference between revisions

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[[Image:2irp.gif|left|200px]]


{{Structure
==Crystal structure of the l-fuculose-1-phosphate aldolase (aq_1979) from aquifex aeolicus VF5==
|PDB= 2irp |SIZE=350|CAPTION= <scene name='initialview01'>2irp</scene>, resolution 2.40&Aring;
<StructureSection load='2irp' size='340' side='right'caption='[[2irp]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene> and <scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>
<table><tr><td colspan='2'>[[2irp]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus_VF5 Aquifex aeolicus VF5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IRP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IRP FirstGlance]. <br>
|ACTIVITY= [http://en.wikipedia.org/wiki/L-fuculose-phosphate_aldolase L-fuculose-phosphate aldolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.2.17 4.1.2.17]  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
|GENE=  
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
}}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2irp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2irp OCA], [https://pdbe.org/2irp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2irp RCSB], [https://www.ebi.ac.uk/pdbsum/2irp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2irp ProSAT], [https://www.topsan.org/Proteins/RSGI/2irp TOPSAN]</span></td></tr>
 
</table>
'''Crystal structure of the l-fuculose-1-phosphate aldolase (aq_1979) from aquifex aeolicus VF5'''
== Function ==
 
[https://www.uniprot.org/uniprot/MTNB_AQUAE MTNB_AQUAE] Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P).[HAMAP-Rule:MF_01677]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2IRP is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IRP OCA].  
Check<jmol>
[[Category: Aquifex aeolicus]]
  <jmolCheckbox>
[[Category: L-fuculose-phosphate aldolase]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ir/2irp_consurf.spt"</scriptWhenChecked>
[[Category: Single protein]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Baba, S.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Ebihara, A.]]
  </jmolCheckbox>
[[Category: Gayathri, D.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2irp ConSurf].
[[Category: Jeyakanthan, J.]]
<div style="clear:both"></div>
[[Category: Kuramitsu, S.]]
__TOC__
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
</StructureSection>
[[Category: Shinkai, A.]]
[[Category: Aquifex aeolicus VF5]]
[[Category: Shiro, Y.]]
[[Category: Large Structures]]
[[Category: Velmurugan, D.]]
[[Category: Baba S]]
[[Category: Yogavel, M.]]
[[Category: Ebihara A]]
[[Category: Yokoyama, S.]]
[[Category: Gayathri D]]
[[Category: BME]]
[[Category: Jeyakanthan J]]
[[Category: CL]]
[[Category: Kuramitsu S]]
[[Category: aldehyde]]
[[Category: Shinkai A]]
[[Category: aldolase]]
[[Category: Shiro Y]]
[[Category: enzymatic mechanism]]
[[Category: Velmurugan D]]
[[Category: lyase]]
[[Category: Yogavel M]]
[[Category: national project on protein structural and functional analyse]]
[[Category: Yokoyama S]]
[[Category: nppsfa]]
[[Category: riken structural genomics/proteomics initiative]]
[[Category: rsgi]]
[[Category: structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 17:32:29 2008''

Latest revision as of 22:24, 26 March 2025

Crystal structure of the l-fuculose-1-phosphate aldolase (aq_1979) from aquifex aeolicus VF5

2irp, resolution 2.40Å

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