2oyo: Difference between revisions

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[[Image:2oyo.gif|left|200px]]


{{Structure
==Crystal structure of Uncharacterized peroxidase-related protein (YP_604910.1) from Deinococcus geothermalis DSM 11300 at 1.51 A resolution==
|PDB= 2oyo |SIZE=350|CAPTION= <scene name='initialview01'>2oyo</scene>, resolution 1.510&Aring;
<StructureSection load='2oyo' size='340' side='right'caption='[[2oyo]], [[Resolution|resolution]] 1.51&Aring;' scene=''>
|SITE=
== Structural highlights ==
|LIGAND= <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>
<table><tr><td colspan='2'>[[2oyo]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_geothermalis_DSM_11300 Deinococcus geothermalis DSM 11300]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OYO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OYO FirstGlance]. <br>
|ACTIVITY=
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.51&#8491;</td></tr>
|GENE= YP_604910.1, Dgeo_1446 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=68909 Deinococcus geothermalis])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
}}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oyo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oyo OCA], [https://pdbe.org/2oyo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oyo RCSB], [https://www.ebi.ac.uk/pdbsum/2oyo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oyo ProSAT], [https://www.topsan.org/Proteins/JCSG/2oyo TOPSAN]</span></td></tr>
 
</table>
'''Crystal structure of Uncharacterized peroxidase-related protein (YP_604910.1) from Deinococcus geothermalis DSM 11300 at 1.51 A resolution'''
== Function ==
 
[https://www.uniprot.org/uniprot/Q1IYE3_DEIGD Q1IYE3_DEIGD] Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity.[SAAS:SAAS00088543]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2OYO is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Deinococcus_geothermalis Deinococcus geothermalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OYO OCA].  
Check<jmol>
[[Category: Deinococcus geothermalis]]
  <jmolCheckbox>
[[Category: Single protein]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oy/2oyo_consurf.spt"</scriptWhenChecked>
[[Category: JCSG, Joint Center for Structural Genomics.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: MPD]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: carboxymuconolactone decarboxylase family]]
  </jmolCheckbox>
[[Category: jcsg]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oyo ConSurf].
[[Category: joint center for structural genomic]]
<div style="clear:both"></div>
[[Category: protein structure initiative]]
__TOC__
[[Category: psi-2]]
</StructureSection>
[[Category: structural genomic]]
[[Category: Deinococcus geothermalis DSM 11300]]
[[Category: uncharacterised peroxidase-related]]
[[Category: Large Structures]]
[[Category: uncharacterized peroxidase-related]]
[[Category: yp_604910 1]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:06:18 2008''
Retrieved from "https://proteopedia.org/2oyo"