2pmb: Difference between revisions

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[[Image:2pmb.jpg|left|200px]]


{{Structure
==Crystal structure of predicted nucleotide-binding protein from Vibrio cholerae==
|PDB= 2pmb |SIZE=350|CAPTION= <scene name='initialview01'>2pmb</scene>, resolution 1.99&Aring;
<StructureSection load='2pmb' size='340' side='right'caption='[[2pmb]], [[Resolution|resolution]] 1.99&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene> and <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PMB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PMB FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.99&#8491;</td></tr>
|GENE= VC_0899 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=666 Vibrio cholerae])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
}}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pmb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pmb OCA], [https://pdbe.org/2pmb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pmb RCSB], [https://www.ebi.ac.uk/pdbsum/2pmb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pmb ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2pmb TOPSAN]</span></td></tr>
 
</table>
'''Crystal structure of predicted nucleotide-binding protein from Vibrio cholerae'''
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
==About this Structure==
  <jmolCheckbox>
2PMB is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PMB OCA].
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pm/2pmb_consurf.spt"</scriptWhenChecked>
[[Category: Single protein]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Vibrio cholerae]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Almo, S C.]]
  </jmolCheckbox>
[[Category: Burley, S K.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pmb ConSurf].
[[Category: Gheyi, T.]]
<div style="clear:both"></div>
[[Category: Gilmore, J.]]
__TOC__
[[Category: Iizuka, M.]]
</StructureSection>
[[Category: Maletic, M.]]
[[Category: Large Structures]]
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
[[Category: Almo SC]]
[[Category: Patskovsky, Y.]]
[[Category: Burley SK]]
[[Category: Sauder, J M.]]
[[Category: Gheyi T]]
[[Category: Shi, W.]]
[[Category: Gilmore J]]
[[Category: Smith, D.]]
[[Category: Iizuka M]]
[[Category: Toro, R.]]
[[Category: Maletic M]]
[[Category: Wasserman, S R.]]
[[Category: Patskovsky Y]]
[[Category: Zhan, C.]]
[[Category: Sauder JM]]
[[Category: GOL]]
[[Category: Shi W]]
[[Category: PO4]]
[[Category: Smith D]]
[[Category: new york structural genomics research consortium]]
[[Category: Toro R]]
[[Category: new york structural genomix research consortium]]
[[Category: Wasserman SR]]
[[Category: nysgrc]]
[[Category: Zhan C]]
[[Category: nysgxrc]]
[[Category: protein structure initiative]]
[[Category: psi]]
[[Category: structural genomic]]
 
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