3ceb: Difference between revisions

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New page: left|200px {{Structure |PDB= 3ceb |SIZE=350|CAPTION= <scene name='initialview01'>3ceb</scene>, resolution 2.400Å |SITE= <scene name='pdbsite=AC1:So4+Binding+Site...
 
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[[Image:3ceb.jpg|left|200px]]


{{Structure
==Crystal structure of a putative 4-amino-4-deoxychorismate lyase (hs_0128) from haemophilus somnus 129pt at 2.40 A resolution==
|PDB= 3ceb |SIZE=350|CAPTION= <scene name='initialview01'>3ceb</scene>, resolution 2.400&Aring;
<StructureSection load='3ceb' size='340' side='right'caption='[[3ceb]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
|SITE= <scene name='pdbsite=AC1:So4+Binding+Site+For+Residue+A+194'>AC1</scene>, <scene name='pdbsite=AC2:So4+Binding+Site+For+Residue+A+195'>AC2</scene>, <scene name='pdbsite=AC3:So4+Binding+Site+For+Residue+A+196'>AC3</scene>, <scene name='pdbsite=AC4:So4+Binding+Site+For+Residue+A+197'>AC4</scene>, <scene name='pdbsite=AC5:So4+Binding+Site+For+Residue+A+198'>AC5</scene> and <scene name='pdbsite=AC6:Gol+Binding+Site+For+Residue+A+199'>AC6</scene>
== Structural highlights ==
|LIGAND= <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> and <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>
<table><tr><td colspan='2'>[[3ceb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Histophilus_somni_129PT Histophilus somni 129PT]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CEB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CEB FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=LLP:(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC+ACID'>LLP</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
|GENE= YP_718332.1, HS_0128 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=205914 Haemophilus somnus 129PT])
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ceb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ceb OCA], [https://pdbe.org/3ceb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ceb RCSB], [https://www.ebi.ac.uk/pdbsum/3ceb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ceb ProSAT], [https://www.topsan.org/Proteins/JCSG/3ceb TOPSAN]</span></td></tr>
}}
</table>
 
== Function ==
'''Crystal structure of D-aminoacid aminotransferase-like PLP-dependent enzyme (YP_718332.1) from Haemophilus somnus 129PT at 2.40 A resolution'''
[https://www.uniprot.org/uniprot/Q0I0Z6_HAES1 Q0I0Z6_HAES1]  
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
==About this Structure==
Check<jmol>
3CEB is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Haemophilus_somnus_129pt Haemophilus somnus 129pt]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CEB OCA].
  <jmolCheckbox>
[[Category: Haemophilus somnus 129pt]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ce/3ceb_consurf.spt"</scriptWhenChecked>
[[Category: Single protein]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: JCSG, Joint Center for Structural Genomics.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: GOL]]
  </jmolCheckbox>
[[Category: SO4]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ceb ConSurf].
[[Category: d-aminoacid aminotransferase-like plp-dependent enzyme]]
<div style="clear:both"></div>
[[Category: jcsg]]
__TOC__
[[Category: joint center for structural genomic]]
</StructureSection>
[[Category: protein structure initiative]]
[[Category: Histophilus somni 129PT]]
[[Category: psi-2]]
[[Category: Large Structures]]
[[Category: structural genomic]]
[[Category: yp_718332 1]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 19:03:46 2008''

Latest revision as of 11:29, 1 February 2023

Crystal structure of a putative 4-amino-4-deoxychorismate lyase (hs_0128) from haemophilus somnus 129pt at 2.40 A resolution

3ceb, resolution 2.40Å

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