5cy8: Difference between revisions
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New page: '''Unreleased structure''' The entry 5cy8 is ON HOLD Authors: Ngo, H.P.T; Kang, L.W. Description: Structure of Xoo1075, a peptide deformylase from Xanthomonas oryzae pv oryze, in compl... |
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==Structure of Xoo1075, a peptide deformylase from Xanthomonas oryzae pv oryze, in complex with fragment 244== | |||
<StructureSection load='5cy8' size='340' side='right'caption='[[5cy8]], [[Resolution|resolution]] 2.38Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[5cy8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Xanthomonas_oryzae_pv._oryzae_KACC_10331 Xanthomonas oryzae pv. oryzae KACC 10331]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CY8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CY8 FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.38Å</td></tr> | |||
[[ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=56V:(3R)-2,3-DIHYDRO[1,3]THIAZOLO[3,2-A]BENZIMIDAZOL-3-OL'>56V</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | ||
[[ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5cy8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cy8 OCA], [https://pdbe.org/5cy8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5cy8 RCSB], [https://www.ebi.ac.uk/pdbsum/5cy8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5cy8 ProSAT]</span></td></tr> | ||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/Q5H3Z2_XANOR Q5H3Z2_XANOR] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163] | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Large Structures]] | |||
[[Category: Xanthomonas oryzae pv. oryzae KACC 10331]] | |||
[[Category: Kang LW]] | |||
[[Category: Ngo HPT]] | |||
Latest revision as of 16:13, 8 November 2023
Structure of Xoo1075, a peptide deformylase from Xanthomonas oryzae pv oryze, in complex with fragment 244
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